Changes
On September 16, 2020 at 7:01:48 PM +0200, not logged in:
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Added the following fields to resource 2016-03-02_M3_0.0400uls_22f26fe5.rtdc in Polyacrylamide beads measured with RT-DC at different flow rates
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| f | 1 | { | f | 1 | { |
| 2 | "authors": "Paul M\u00fcller, Christoph Herold, Maik Herbig, Jochen | 2 | "authors": "Paul M\u00fcller, Christoph Herold, Maik Herbig, Jochen | ||
| 3 | Guck", | 3 | Guck", | ||
| 4 | "creator_user_id": "d76d937b-3601-4559-92da-585a47c257f5", | 4 | "creator_user_id": "d76d937b-3601-4559-92da-585a47c257f5", | ||
| 5 | "doi": "10.6084/m9.figshare.12721436.v1", | 5 | "doi": "10.6084/m9.figshare.12721436.v1", | ||
| 6 | "groups": [], | 6 | "groups": [], | ||
| 7 | "id": "c7a98a04-4e0a-98a7-fb0b-eca379d1f219", | 7 | "id": "c7a98a04-4e0a-98a7-fb0b-eca379d1f219", | ||
| 8 | "isopen": true, | 8 | "isopen": true, | ||
| 9 | "license_id": "CC0-1.0", | 9 | "license_id": "CC0-1.0", | ||
| 10 | "license_title": "Creative Commons Public Domain Dedication", | 10 | "license_title": "Creative Commons Public Domain Dedication", | ||
| 11 | "license_url": "https://creativecommons.org/publicdomain/zero/1.0/", | 11 | "license_url": "https://creativecommons.org/publicdomain/zero/1.0/", | ||
| 12 | "metadata_created": "2020-09-16T16:02:44.208067", | 12 | "metadata_created": "2020-09-16T16:02:44.208067", | ||
| n | 13 | "metadata_modified": "2020-09-16T17:01:47.933634", | n | 13 | "metadata_modified": "2020-09-16T17:01:48.515834", |
| 14 | "name": "figshare-12721436-v1", | 14 | "name": "figshare-12721436-v1", | ||
| 15 | "notes": "Polyacrylamide hydrogel beads from the same production | 15 | "notes": "Polyacrylamide hydrogel beads from the same production | ||
| 16 | batch were measured\nwith real-time deformability cytometry (RT-DC) at | 16 | batch were measured\nwith real-time deformability cytometry (RT-DC) at | ||
| 17 | different flow rates (0.04,\n0.08, and 0.12 \u00b5L/s). The beads were | 17 | different flow rates (0.04,\n0.08, and 0.12 \u00b5L/s). The beads were | ||
| 18 | designed to have a Young's modulus of\napproximately 4.3 \u00b1 1.5 | 18 | designed to have a Young's modulus of\napproximately 4.3 \u00b1 1.5 | ||
| 19 | kPa. These measurements were used to illustrate the\ncorrection of | 19 | kPa. These measurements were used to illustrate the\ncorrection of | ||
| 20 | systematic errors for the computation of the Young's modulus in\nRT-DC | 20 | systematic errors for the computation of the Young's modulus in\nRT-DC | ||
| 21 | (figure 10 in [1]). The reservoir measurement was added for the sake | 21 | (figure 10 in [1]). The reservoir measurement was added for the sake | ||
| 22 | of\ncompleteness. The files were converted from the .tdms file format | 22 | of\ncompleteness. The files were converted from the .tdms file format | ||
| 23 | to the .rtdc\nfile format using DCKit 0.10.0 [2] and dclab 0.27.8 [3]. | 23 | to the .rtdc\nfile format using DCKit 0.10.0 [2] and dclab 0.27.8 [3]. | ||
| 24 | \n \nBefore analysis, the data should be filtered for porosity (1.0 < | 24 | \n \nBefore analysis, the data should be filtered for porosity (1.0 < | ||
| 25 | area_ratio <\n1.1) and deformation (0 < deform < 0.035). This is | 25 | area_ratio <\n1.1) and deformation (0 < deform < 0.035). This is | ||
| 26 | necessary, because events\nwere not always detected correctly | 26 | necessary, because events\nwere not always detected correctly | ||
| 27 | (incorrect contour data) due to lack of\nimaging contrast. \n \n \n | 27 | (incorrect contour data) due to lack of\nimaging contrast. \n \n \n | ||
| 28 | **References:** \n[1] Christoph Herold. Mapping of Deformation to | 28 | **References:** \n[1] Christoph Herold. Mapping of Deformation to | ||
| 29 | Apparent Young\u2019s Modulus in\nReal-Time Deformability Cytometry. | 29 | Apparent Young\u2019s Modulus in\nReal-Time Deformability Cytometry. | ||
| 30 | ArXiv e-prints 1704.00572 [cond-mat.soft],\n2017. arXiv:1704.00572v1. | 30 | ArXiv e-prints 1704.00572 [cond-mat.soft],\n2017. arXiv:1704.00572v1. | ||
| 31 | \n[2] https://github.com/ZELLMECHANIK-DRESDEN/DCKit \n[3] | 31 | \n[2] https://github.com/ZELLMECHANIK-DRESDEN/DCKit \n[3] | ||
| 32 | https://github.com/ZellMechanik-Dresden/dclab \n \n \n **SHA256 | 32 | https://github.com/ZellMechanik-Dresden/dclab \n \n \n **SHA256 | ||
| 33 | sums:** | 33 | sums:** | ||
| 34 | cc61d10c89969c1f8fa2c55ec933b35\n2016-03-02_M3_0.0400uls_22f26fe5.rtdc | 34 | cc61d10c89969c1f8fa2c55ec933b35\n2016-03-02_M3_0.0400uls_22f26fe5.rtdc | ||
| 35 | 9e39414ab9d4ccafa3097d229e2e31d\n2016-03-02_M4_0.0800uls_1e1e8234.rtdc | 35 | 9e39414ab9d4ccafa3097d229e2e31d\n2016-03-02_M4_0.0800uls_1e1e8234.rtdc | ||
| 36 | b3d5f5e8d3ec32d641aa4f26d09cdd0\n2016-03-02_M5_0.1200uls_d387ab27.rtdc | 36 | b3d5f5e8d3ec32d641aa4f26d09cdd0\n2016-03-02_M5_0.1200uls_d387ab27.rtdc | ||
| 37 | a71e12f7c0d41bbf0545e0a02\n2016-03-02_M6_reservoir_efe92abf.rtdc\n\n", | 37 | a71e12f7c0d41bbf0545e0a02\n2016-03-02_M6_reservoir_efe92abf.rtdc\n\n", | ||
| 38 | "num_resources": 5, | 38 | "num_resources": 5, | ||
| 39 | "num_tags": 0, | 39 | "num_tags": 0, | ||
| 40 | "organization": { | 40 | "organization": { | ||
| 41 | "approval_status": "approved", | 41 | "approval_status": "approved", | ||
| 42 | "created": "2020-09-16T15:58:45.009115", | 42 | "created": "2020-09-16T15:58:45.009115", | ||
| 43 | "description": "This lab contains selected data imported from | 43 | "description": "This lab contains selected data imported from | ||
| 44 | figshare. If you would like your dataset to appear here, please send | 44 | figshare. If you would like your dataset to appear here, please send | ||
| 45 | the figshare DOI to Paul M\u00fcller.", | 45 | the figshare DOI to Paul M\u00fcller.", | ||
| 46 | "id": "5a7a053d-55fb-4f99-960c-f478d0bd418f", | 46 | "id": "5a7a053d-55fb-4f99-960c-f478d0bd418f", | ||
| 47 | "image_url": "", | 47 | "image_url": "", | ||
| 48 | "is_organization": true, | 48 | "is_organization": true, | ||
| 49 | "name": "figshare-import", | 49 | "name": "figshare-import", | ||
| 50 | "state": "active", | 50 | "state": "active", | ||
| 51 | "title": "Figshare mirror", | 51 | "title": "Figshare mirror", | ||
| 52 | "type": "organization" | 52 | "type": "organization" | ||
| 53 | }, | 53 | }, | ||
| 54 | "owner_org": "5a7a053d-55fb-4f99-960c-f478d0bd418f", | 54 | "owner_org": "5a7a053d-55fb-4f99-960c-f478d0bd418f", | ||
| 55 | "private": false, | 55 | "private": false, | ||
| 56 | "references": "arxiv:1704.00572, | 56 | "references": "arxiv:1704.00572, | ||
| 57 | https://github.com/ZELLMECHANIK-DRESDEN/DCKit, | 57 | https://github.com/ZELLMECHANIK-DRESDEN/DCKit, | ||
| 58 | https://github.com/ZellMechanik-Dresden/dclab", | 58 | https://github.com/ZellMechanik-Dresden/dclab", | ||
| 59 | "relationships_as_object": [], | 59 | "relationships_as_object": [], | ||
| 60 | "relationships_as_subject": [], | 60 | "relationships_as_subject": [], | ||
| 61 | "resources": [ | 61 | "resources": [ | ||
| 62 | { | 62 | { | ||
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| 65 | "created": "2020-09-16T16:02:45.190901", | 65 | "created": "2020-09-16T16:02:45.190901", | ||
| n | n | 66 | "dc:experiment:date": "2016-03-03", | ||
| 67 | "dc:experiment:event count": 4544, | ||||
| 68 | "dc:experiment:run index": 3, | ||||
| 69 | "dc:experiment:sample": "S1 beads | ||||
| 70 | 0.04\u2009\u00b5Ls\u207b\u00b9", | ||||
| 71 | "dc:experiment:time": "15:01:00", | ||||
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| 73 | "dc:imaging:flash duration": 2.0, | ||||
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| 80 | "dc:online_contour:bin area min": 50, | ||||
| 81 | "dc:online_contour:bin kernel": 5, | ||||
| 82 | "dc:online_contour:bin threshold": 3, | ||||
| 83 | "dc:online_contour:image blur": 0, | ||||
| 84 | "dc:online_contour:no absdiff": true, | ||||
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| 89 | "dc:setup:flow rate sheath": 0.03, | ||||
| 90 | "dc:setup:identifier": "RTDC1", | ||||
| 91 | "dc:setup:medium": "CellCarrier", | ||||
| 92 | "dc:setup:module composition": "AcCellerator", | ||||
| 93 | "dc:setup:software version": "dclab 0.27.8 | dclab 0.27.8", | ||||
| 94 | "dc:setup:temperature": 23.0, | ||||
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| 181 | } | 210 | } | ||
| 182 | ], | 211 | ], | ||
| 183 | "state": "active", | 212 | "state": "active", | ||
| 184 | "tags": [], | 213 | "tags": [], | ||
| 185 | "title": "Polyacrylamide beads measured with RT-DC at different flow | 214 | "title": "Polyacrylamide beads measured with RT-DC at different flow | ||
| 186 | rates", | 215 | rates", | ||
| 187 | "type": "dataset" | 216 | "type": "dataset" | ||
| 188 | } | 217 | } |