Click on the log titles below to expand the log entries present in this DC resource.

cfg-#1 [experiment]
date = 2020-07-30
event count = 18568
run index = 1
sample = 200730_TG_RhoA_Colon_CD45_CD31_Epcam_2
time = 13:16:25

[fluorescence]
bit depth = 16
channel 1 name = 525/50
channel 2 name = 593/46
channel 3 name = 700/75
channel count = 3
channels installed = 3
laser 1 lambda = 488.000000000000
laser 1 power = 1.500000000000
laser 2 lambda = 561.000000000000
laser 2 power = 15.000000000000
laser 3 lambda = 640.000000000000
laser 3 power = 15.000000000000
laser count = 3
lasers installed = 3
sample rate = 625000.000000000000
samples per event = 353
signal max = 1.000000000000
signal min = -1.000000000000
trace median = 5

[imaging]
flash device = LED (ZMD L1)
flash duration = 2.000000000000
frame rate = 1600.000000000000
pixel size = 0.338999986649
roi position x = 557.000000000000
roi position y = 456.000000000000
roi size x = 250
roi size y = 80

[online_contour]
bin area min = 10
bin kernel = 5
bin threshold = -6
image blur = 0
no absdiff = True

[online_filter]
area_ratio max = 1.049999952316
area_ratio min = 1.000000000000
area_ratio soft limit = True
area_um max = 1500.000000000000
area_um min = 10.000000000000
area_um soft limit = False
aspect max = 2.000000000000
aspect min = 1.000000000000
aspect soft limit = True
deform max = 0.200000002980
deform min = 0.000000000000
deform soft limit = True
size_x max = 80
size_x min = 1
size_x soft limit = False
size_y max = 80
size_y min = 1
size_y soft limit = False

[setup]
channel width = 20.000000000000
chip region = channel
flow rate = 0.059999998659
flow rate sample = 0.014999999665
flow rate sheath = 0.045000001788
identifier = ZMDD-AcC-0be020-edfbdb
medium = CellCarrierB
module composition = AcCellerator,FluorescenceModule
software version = ShapeIn 2.0.8
temperature = 24.700000762939
cfg-#2 [experiment]
date = 2020-07-30
event count = 75709
run index = 2
sample = 200730_TG_RhoA_Colon_CD45_CD31_Epcam_2
time = 13:30:55

[fluorescence]
bit depth = 16
channel 1 name = 525/50
channel 2 name = 593/46
channel 3 name = 700/75
channel count = 3
channels installed = 3
laser 1 lambda = 488.000000000000
laser 1 power = 1.500000000000
laser 2 lambda = 561.000000000000
laser 2 power = 15.000000000000
laser 3 lambda = 640.000000000000
laser 3 power = 15.000000000000
laser count = 3
lasers installed = 3
sample rate = 625000.000000000000
samples per event = 353
signal max = 1.000000000000
signal min = -1.000000000000
trace median = 5

[imaging]
flash device = LED (ZMD L1)
flash duration = 2.000000000000
frame rate = 1600.000000000000
pixel size = 0.338999986649
roi position x = 557.000000000000
roi position y = 456.000000000000
roi size x = 250
roi size y = 80

[online_contour]
bin area min = 10
bin kernel = 5
bin threshold = -6
image blur = 0
no absdiff = True

[online_filter]
area_ratio max = 1.049999952316
area_ratio min = 1.000000000000
area_ratio soft limit = True
area_um max = 1500.000000000000
area_um min = 10.000000000000
area_um soft limit = False
aspect max = 2.000000000000
aspect min = 1.000000000000
aspect soft limit = True
deform max = 0.200000002980
deform min = 0.000000000000
deform soft limit = True
size_x max = 80
size_x min = 1
size_x soft limit = False
size_y max = 80
size_y min = 1
size_y soft limit = False

[setup]
channel width = 20.000000000000
chip region = channel
flow rate = 0.059999998659
flow rate sample = 0.014999999665
flow rate sheath = 0.045000001788
identifier = ZMDD-AcC-0be020-edfbdb
medium = CellCarrierB
module composition = AcCellerator,FluorescenceModule
software version = ShapeIn 2.0.8
temperature = 25.000000000000
dckit-history [
{
"libraries": {
"dckit": "0.14.5",
"dclab": "0.47.0",
"h5py": "3.7.0",
"imageio": "2.10.3",
"nptdms": "1.6.0",
"numpy": "1.23.5"
},
"python": {
"build": "tags/v3.8.0:fa919fd, Oct 14 2019 19:37:50",
"implementation": "CPython",
"version": "3.8.0"
},
"system": {
"info": "Windows-10-10.0.18362-SP0",
"machine": "AMD64",
"name": "Windows",
"release": "10",
"version": "10.0.18362"
},
"task": {
"name": "update metadata",
"new": {
"experiment:sample": "KO_S2_tumour"
},
"old": {
"experiment:sample": "200730_Combined_2_RhoA_CD45_CD31_Epcam"
}
},
"utc": {
"date": "2023-01-18",
"time": "21:38:57"
}
},
{
"libraries": {
"dckit": "0.14.5",
"dclab": "0.47.0",
"h5py": "3.7.0",
"imageio": "2.10.3",
"nptdms": "1.6.0",
"numpy": "1.23.5"
},
"python": {
"build": "tags/v3.8.0:fa919fd, Oct 14 2019 19:37:50",
"implementation": "CPython",
"version": "3.8.0"
},
"system": {
"info": "Windows-10-10.0.18362-SP0",
"machine": "AMD64",
"name": "Windows",
"release": "10",
"version": "10.0.18362"
},
"task": {
"name": "update metadata",
"new": {
"experiment:sample": "Tumour_S8"
},
"old": {
"experiment:sample": "KO_S2_tumour"
}
},
"utc": {
"date": "2023-01-18",
"time": "22:39:56"
}
}
]
dclab-compress {
"files": [
{
"index": 1,
"md5-5M": "c9386606b77294d94b6d533bc31299c7",
"name": "Tumour_S8.rtdc"
}
],
"libraries": {
"dclab": "0.47.2",
"h5py": "3.7.0",
"numpy": "1.23.5"
},
"python": {
"build": "tags/v3.9.13:6de2ca5, May 17 2022 16:36:42",
"implementation": "CPython",
"version": "3.9.13"
},
"system": {
"info": "Windows-10-10.0.18363-SP0",
"machine": "AMD64",
"name": "Windows",
"release": "10",
"version": "10.0.18363"
},
"utc": {
"date": "2023-01-19",
"time": "22:31:49"
}
}
dclab-compress-warnings WrongConfigurationTypeWarning
in dclab.rtdc_dataset.config line 77:
Type of confguration key [fluorescence]: sample rate should be <class 'numbers.Integral'>, got
<class 'numpy.float64'>!
WrongConfigurationTypeWarning
in dclab.rtdc_dataset.config line 77:
Type of confguration key [imaging]: roi position x should be <class 'numbers.Integral'>, got
<class 'numpy.float64'>!
WrongConfigurationTypeWarning
in dclab.rtdc_dataset.config line 77:
Type of confguration key [imaging]: roi position y should be <class 'numbers.Integral'>, got
<class 'numpy.float64'>!
dclab-join {
"files": [
{
"index": 1,
"name": "M001_data.rtdc",
"sha256": "a64526ccd172281ea1946d128430b7219c54fda885f68a5bc7a9de31d49e28bf"
},
{
"index": 2,
"name": "M002_data.rtdc",
"sha256": "28439488a5ca04269a705129b6897639eb2fb3bd84c9647e5b7c4307999746e4"
}
],
"libraries": {
"dclab": "0.27.6",
"h5py": "2.10.0",
"imageio": "2.8.0",
"nptdms": "0.27.0",
"numpy": "1.18.5"
},
"python": {
"build": "tags/v3.6.8:3c6b436a57, Dec 24 2018 00:16:47",
"implementation": "CPython",
"version": "3.6.8"
},
"system": {
"info": "Windows-10-10.0.17763-SP0",
"machine": "AMD64",
"name": "Windows",
"release": "10",
"version": "10.0.17763"
},
"utc": {
"date": "2020-07-30",
"time": "12:39:06"
}
}
src-#1_log [LOG] number of written datasets 0 13:16:29.459
[LOG] number of written datasets 1000 13:16:45.107
[LOG] number of written datasets 2000 13:17:05.114
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src-#2_log [LOG] number of written datasets 0 13:30:59.587
[LOG] number of written datasets 1000 13:31:09.977
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