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[experiment] date = 2020-07-30 event count = 15427 run index = 1 sample = 200730_TG_RhoA_Colon_CD45_CD31_Epcam_3 time = 13:01:57 [fluorescence] bit depth = 16 channel 1 name = 525/50 channel 2 name = 593/46 channel 3 name = 700/75 channel count = 3 channels installed = 3 laser 1 lambda = 488.000000000000 laser 1 power = 1.500000000000 laser 2 lambda = 561.000000000000 laser 2 power = 15.000000000000 laser 3 lambda = 640.000000000000 laser 3 power = 15.000000000000 laser count = 3 lasers installed = 3 sample rate = 625000.000000000000 samples per event = 351 signal max = 1.000000000000 signal min = -1.000000000000 trace median = 5 [imaging] flash device = LED (ZMD L1) flash duration = 2.000000000000 frame rate = 1600.000000000000 pixel size = 0.337000012398 roi position x = 629.000000000000 roi position y = 490.000000000000 roi size x = 250 roi size y = 80 [online_contour] bin area min = 10 bin kernel = 5 bin threshold = -6 image blur = 0 no absdiff = True [online_filter] area_ratio max = 1.049999952316 area_ratio min = 1.000000000000 area_ratio soft limit = True area_um max = 1500.000000000000 area_um min = 10.000000000000 area_um soft limit = False deform max = 0.200000002980 deform min = 0.000000000000 deform soft limit = True size_x max = 80 size_x min = 1 size_x soft limit = False size_y max = 80 size_y min = 1 size_y soft limit = False [setup] channel width = 20.000000000000 chip region = channel flow rate = 0.059999998659 flow rate sample = 0.014999999665 flow rate sheath = 0.045000001788 identifier = ZMDD-AcC-04682c-208b19 medium = CellCarrierB module composition = AcCellerator,FluorescenceModule software version = 2.1.1.0 temperature = 24.000000000000
[experiment] date = 2020-07-30 event count = 17983 run index = 2 sample = 200730_TG_RhoA_Colon_CD45_CD31_Epcam_3 time = 13:10:31 [fluorescence] bit depth = 16 channel 1 name = 525/50 channel 2 name = 593/46 channel 3 name = 700/75 channel count = 3 channels installed = 3 laser 1 lambda = 488.000000000000 laser 1 power = 1.500000000000 laser 2 lambda = 561.000000000000 laser 2 power = 15.000000000000 laser 3 lambda = 640.000000000000 laser 3 power = 15.000000000000 laser count = 3 lasers installed = 3 sample rate = 625000.000000000000 samples per event = 351 signal max = 1.000000000000 signal min = -1.000000000000 trace median = 5 [imaging] flash device = LED (ZMD L1) flash duration = 2.000000000000 frame rate = 1600.000000000000 pixel size = 0.337000012398 roi position x = 629.000000000000 roi position y = 490.000000000000 roi size x = 250 roi size y = 80 [online_contour] bin area min = 10 bin kernel = 5 bin threshold = -6 image blur = 0 no absdiff = True [online_filter] area_ratio max = 1.049999952316 area_ratio min = 1.000000000000 area_ratio soft limit = True area_um max = 1500.000000000000 area_um min = 10.000000000000 area_um soft limit = False deform max = 0.200000002980 deform min = 0.000000000000 deform soft limit = True size_x max = 80 size_x min = 1 size_x soft limit = False size_y max = 80 size_y min = 1 size_y soft limit = False [setup] channel width = 20.000000000000 chip region = channel flow rate = 0.059999998659 flow rate sample = 0.014999999665 flow rate sheath = 0.045000001788 identifier = ZMDD-AcC-04682c-208b19 medium = CellCarrierB module composition = AcCellerator,FluorescenceModule software version = 2.1.1.0 temperature = 24.299999237061
[experiment] date = 2020-07-30 event count = 5037 run index = 3 sample = 200730_TG_RhoA_Colon_CD45_CD31_Epcam_3 time = 13:26:14 [fluorescence] bit depth = 16 channel 1 name = 525/50 channel 2 name = 593/46 channel 3 name = 700/75 channel count = 3 channels installed = 3 laser 1 lambda = 488.000000000000 laser 1 power = 1.500000000000 laser 2 lambda = 561.000000000000 laser 2 power = 15.000000000000 laser 3 lambda = 640.000000000000 laser 3 power = 15.000000000000 laser count = 3 lasers installed = 3 sample rate = 625000.000000000000 samples per event = 351 signal max = 1.000000000000 signal min = -1.000000000000 trace median = 5 [imaging] flash device = LED (ZMD L1) flash duration = 2.000000000000 frame rate = 1600.000000000000 pixel size = 0.337000012398 roi position x = 629.000000000000 roi position y = 490.000000000000 roi size x = 250 roi size y = 80 [online_contour] bin area min = 10 bin kernel = 5 bin threshold = -6 image blur = 0 no absdiff = True [online_filter] area_ratio max = 1.049999952316 area_ratio min = 1.000000000000 area_ratio soft limit = True area_um max = 1500.000000000000 area_um min = 10.000000000000 area_um soft limit = False deform max = 0.200000002980 deform min = 0.000000000000 deform soft limit = True size_x max = 80 size_x min = 1 size_x soft limit = False size_y max = 80 size_y min = 1 size_y soft limit = False [setup] channel width = 20.000000000000 chip region = channel flow rate = 0.059999998659 flow rate sample = 0.014999999665 flow rate sheath = 0.045000001788 identifier = ZMDD-AcC-04682c-208b19 medium = CellCarrierB module composition = AcCellerator,FluorescenceModule software version = 2.1.1.0 temperature = 24.600000381470
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{ "files": [ { "index": 1, "md5-5M": "6c5315b146368002c370d8bcf1badff4", "name": "Tumour_S16.rtdc" } ], "libraries": { "dclab": "0.47.2", "h5py": "3.7.0", "numpy": "1.23.5" }, "python": { "build": "tags/v3.9.13:6de2ca5, May 17 2022 16:36:42", "implementation": "CPython", "version": "3.9.13" }, "system": { "info": "Windows-10-10.0.18363-SP0", "machine": "AMD64", "name": "Windows", "release": "10", "version": "10.0.18363" }, "utc": { "date": "2023-01-19", "time": "22:23:39" } }
WrongConfigurationTypeWarning in dclab.rtdc_dataset.config line 77: Type of confguration key [fluorescence]: sample rate should be <class 'numbers.Integral'>, got <class 'numpy.float64'>! WrongConfigurationTypeWarning in dclab.rtdc_dataset.config line 77: Type of confguration key [imaging]: roi position x should be <class 'numbers.Integral'>, got <class 'numpy.float64'>! WrongConfigurationTypeWarning in dclab.rtdc_dataset.config line 77: Type of confguration key [imaging]: roi position y should be <class 'numbers.Integral'>, got <class 'numpy.float64'>!
{ "files": [ { "index": 1, "name": "M001_data.rtdc", "sha256": "c22c22b945e4dc9109a61e53d4598a2c40b4518561fa839e5ee146559ec30a12" }, { "index": 2, "name": "M002_data.rtdc", "sha256": "829b3fe9507842c472cf3deb938f6eabe05767ed807ddd99ca074cd92611fea9" }, { "index": 3, "name": "M003_data.rtdc", "sha256": "3050e821eabfc5311d4373c381bfdeb7a8ec405af6a87f2801ff1419ef3365a0" } ], "libraries": { "dclab": "0.27.6", "h5py": "2.10.0", "imageio": "2.8.0", "nptdms": "0.27.0", "numpy": "1.18.5" }, "python": { "build": "tags/v3.6.8:3c6b436a57, Dec 24 2018 00:16:47", "implementation": "CPython", "version": "3.6.8" }, "system": { "info": "Windows-10-10.0.17134-SP0", "machine": "AMD64", "name": "Windows", "release": "10", "version": "10.0.17134" }, "utc": { "date": "2020-07-30", "time": "12:36:07" } }
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[LOG] number of written datasets 0 [LOG] number of written datasets 1000 [LOG] number of written datasets 2000 [LOG] number of written datasets 3000 [LOG] number of written datasets 4000 [LOG] number of written datasets 5000