Click on the log titles below to expand the log entries present in this DC resource.
cfg-#1
[experiment]
date = 2020-10-01
event count = 2997
run index = 1
sample = 201001_13_TG_RhoA_Colon_CD45_Epcam
time = 14:23:24
[fluorescence]
bit depth = 16
channel 1 name = 525/50
channel 2 name = 593/46
channel 3 name = 700/75
channel count = 3
channels installed = 3
laser 1 lambda = 488.000000000000
laser 1 power = 1.500000000000
laser 3 lambda = 640.000000000000
laser 3 power = 15.000000000000
laser count = 2
lasers installed = 3
sample rate = 625000.000000000000
samples per event = 353
signal max = 1.000000000000
signal min = -1.000000000000
trace median = 5
[imaging]
flash device = LED (ZMD L1)
flash duration = 2.000000000000
frame rate = 1600.000000000000
pixel size = 0.338999986649
roi position x = 557.000000000000
roi position y = 456.000000000000
roi size x = 250
roi size y = 80
[online_contour]
bin area min = 10
bin kernel = 5
bin threshold = -6
image blur = 0
no absdiff = True
[online_filter]
area_ratio max = 1.049999952316
area_ratio min = 1.000000000000
area_ratio soft limit = True
area_um max = 1500.000000000000
area_um min = 10.000000000000
area_um soft limit = False
aspect max = 3.000000000000
aspect min = 1.000000000000
aspect soft limit = True
deform max = 0.200000002980
deform min = 0.000000000000
deform soft limit = True
size_x max = 80
size_x min = 1
size_x soft limit = False
size_y max = 80
size_y min = 1
size_y soft limit = False
[setup]
channel width = 20.000000000000
chip region = channel
flow rate = 0.059999998659
flow rate sample = 0.014999999665
flow rate sheath = 0.045000001788
identifier = ZMDD-AcC-774f84-3da488
medium = CellCarrierB
module composition = AcCellerator,FluorescenceModule
software version = 2.1.1.0
temperature = 24.899999618530
cfg-#2
[experiment]
date = 2020-10-01
event count = 2642
run index = 2
sample = 201001_13_TG_RhoA_Colon_CD45_Epcam
time = 14:34:40
[fluorescence]
bit depth = 16
channel 1 name = 525/50
channel 2 name = 593/46
channel 3 name = 700/75
channel count = 3
channels installed = 3
laser 1 lambda = 488.000000000000
laser 1 power = 1.500000000000
laser 3 lambda = 640.000000000000
laser 3 power = 15.000000000000
laser count = 2
lasers installed = 3
sample rate = 625000.000000000000
samples per event = 353
signal max = 1.000000000000
signal min = -1.000000000000
trace median = 5
[imaging]
flash device = LED (ZMD L1)
flash duration = 2.000000000000
frame rate = 1600.000000000000
pixel size = 0.338999986649
roi position x = 557.000000000000
roi position y = 456.000000000000
roi size x = 250
roi size y = 80
[online_contour]
bin area min = 10
bin kernel = 5
bin threshold = -6
image blur = 0
no absdiff = True
[online_filter]
area_ratio max = 1.049999952316
area_ratio min = 1.000000000000
area_ratio soft limit = True
area_um max = 1500.000000000000
area_um min = 10.000000000000
area_um soft limit = False
aspect max = 3.000000000000
aspect min = 1.000000000000
aspect soft limit = True
deform max = 0.200000002980
deform min = 0.000000000000
deform soft limit = True
size_x max = 80
size_x min = 1
size_x soft limit = False
size_y max = 80
size_y min = 1
size_y soft limit = False
[setup]
channel width = 20.000000000000
chip region = channel
flow rate = 0.059999998659
flow rate sample = 0.014999999665
flow rate sheath = 0.045000001788
identifier = ZMDD-AcC-774f84-3da488
medium = CellCarrierB
module composition = AcCellerator,FluorescenceModule
software version = 2.1.1.0
temperature = 25.000000000000
cfg-#3
[experiment]
date = 2020-10-01
event count = 19984
run index = 3
sample = 201001_13_TG_RhoA_Colon_CD45_Epcam
time = 14:46:46
[fluorescence]
bit depth = 16
channel 1 name = 525/50
channel 2 name = 593/46
channel 3 name = 700/75
channel count = 3
channels installed = 3
laser 1 lambda = 488.000000000000
laser 1 power = 1.500000000000
laser 3 lambda = 640.000000000000
laser 3 power = 15.000000000000
laser count = 2
lasers installed = 3
sample rate = 625000.000000000000
samples per event = 353
signal max = 1.000000000000
signal min = -1.000000000000
trace median = 5
[imaging]
flash device = LED (ZMD L1)
flash duration = 2.000000000000
frame rate = 1600.000000000000
pixel size = 0.338999986649
roi position x = 557.000000000000
roi position y = 456.000000000000
roi size x = 250
roi size y = 80
[online_contour]
bin area min = 10
bin kernel = 5
bin threshold = -6
image blur = 0
no absdiff = True
[online_filter]
area_ratio max = 1.049999952316
area_ratio min = 1.000000000000
area_ratio soft limit = True
area_um max = 1500.000000000000
area_um min = 10.000000000000
area_um soft limit = False
aspect max = 3.000000000000
aspect min = 1.000000000000
aspect soft limit = True
deform max = 0.200000002980
deform min = 0.000000000000
deform soft limit = True
size_x max = 80
size_x min = 1
size_x soft limit = False
size_y max = 80
size_y min = 1
size_y soft limit = False
[setup]
channel width = 20.000000000000
chip region = channel
flow rate = 0.059999998659
flow rate sample = 0.014999999665
flow rate sheath = 0.045000001788
identifier = ZMDD-AcC-774f84-3da488
medium = CellCarrierB
module composition = AcCellerator,FluorescenceModule
software version = 2.1.1.0
temperature = 25.200000762939
cfg-#4
[experiment]
date = 2020-10-01
event count = 6485
run index = 4
sample = 201001_13_TG_RhoA_Colon_CD45_Epcam
time = 15:03:27
[fluorescence]
bit depth = 16
channel 1 name = 525/50
channel 2 name = 593/46
channel 3 name = 700/75
channel count = 3
channels installed = 3
laser 1 lambda = 488.000000000000
laser 1 power = 1.500000000000
laser 3 lambda = 640.000000000000
laser 3 power = 15.000000000000
laser count = 2
lasers installed = 3
sample rate = 625000.000000000000
samples per event = 353
signal max = 1.000000000000
signal min = -1.000000000000
trace median = 5
[imaging]
flash device = LED (ZMD L1)
flash duration = 2.000000000000
frame rate = 1600.000000000000
pixel size = 0.338999986649
roi position x = 557.000000000000
roi position y = 456.000000000000
roi size x = 250
roi size y = 80
[online_contour]
bin area min = 10
bin kernel = 5
bin threshold = -6
image blur = 0
no absdiff = True
[online_filter]
area_ratio max = 1.049999952316
area_ratio min = 1.000000000000
area_ratio soft limit = True
area_um max = 1500.000000000000
area_um min = 10.000000000000
area_um soft limit = False
aspect max = 3.000000000000
aspect min = 1.000000000000
aspect soft limit = True
deform max = 0.200000002980
deform min = 0.000000000000
deform soft limit = True
size_x max = 80
size_x min = 1
size_x soft limit = False
size_y max = 80
size_y min = 1
size_y soft limit = False
[setup]
channel width = 20.000000000000
chip region = channel
flow rate = 0.059999998659
flow rate sample = 0.014999999665
flow rate sheath = 0.045000001788
identifier = ZMDD-AcC-774f84-3da488
medium = CellCarrierB
module composition = AcCellerator,FluorescenceModule
software version = 2.1.1.0
temperature = 25.399999618530
cfg-#5
[experiment]
date = 2020-10-01
event count = 4210
run index = 5
sample = 201001_13_TG_RhoA_Colon_CD45_Epcam
time = 15:26:13
[fluorescence]
bit depth = 16
channel 1 name = 525/50
channel 2 name = 593/46
channel 3 name = 700/75
channel count = 3
channels installed = 3
laser 1 lambda = 488.000000000000
laser 1 power = 1.500000000000
laser 3 lambda = 640.000000000000
laser 3 power = 15.000000000000
laser count = 2
lasers installed = 3
sample rate = 625000.000000000000
samples per event = 353
signal max = 1.000000000000
signal min = -1.000000000000
trace median = 5
[imaging]
flash device = LED (ZMD L1)
flash duration = 2.000000000000
frame rate = 1600.000000000000
pixel size = 0.338999986649
roi position x = 557.000000000000
roi position y = 456.000000000000
roi size x = 250
roi size y = 80
[online_contour]
bin area min = 10
bin kernel = 5
bin threshold = -6
image blur = 0
no absdiff = True
[online_filter]
area_ratio max = 1.049999952316
area_ratio min = 1.000000000000
area_ratio soft limit = True
area_um max = 1500.000000000000
area_um min = 10.000000000000
area_um soft limit = False
aspect max = 3.000000000000
aspect min = 1.000000000000
aspect soft limit = True
deform max = 0.200000002980
deform min = 0.000000000000
deform soft limit = True
size_x max = 80
size_x min = 1
size_x soft limit = False
size_y max = 80
size_y min = 1
size_y soft limit = False
[setup]
channel width = 20.000000000000
chip region = channel
flow rate = 0.059999998659
flow rate sample = 0.014999999665
flow rate sheath = 0.045000001788
identifier = ZMDD-AcC-774f84-3da488
medium = CellCarrierB
module composition = AcCellerator,FluorescenceModule
software version = 2.1.1.0
temperature = 25.600000381470
cfg-#6
[experiment]
date = 2020-10-01
event count = 13153
run index = 6
sample = 201001_13_TG_RhoA_Colon_CD45_Epcam
time = 15:36:27
[fluorescence]
bit depth = 16
channel 1 name = 525/50
channel 2 name = 593/46
channel 3 name = 700/75
channel count = 3
channels installed = 3
laser 1 lambda = 488.000000000000
laser 1 power = 1.500000000000
laser 3 lambda = 640.000000000000
laser 3 power = 15.000000000000
laser count = 2
lasers installed = 3
sample rate = 625000.000000000000
samples per event = 353
signal max = 1.000000000000
signal min = -1.000000000000
trace median = 5
[imaging]
flash device = LED (ZMD L1)
flash duration = 2.000000000000
frame rate = 1600.000000000000
pixel size = 0.338999986649
roi position x = 557.000000000000
roi position y = 456.000000000000
roi size x = 250
roi size y = 80
[online_contour]
bin area min = 10
bin kernel = 5
bin threshold = -6
image blur = 0
no absdiff = True
[online_filter]
area_ratio max = 1.049999952316
area_ratio min = 1.000000000000
area_ratio soft limit = True
area_um max = 1500.000000000000
area_um min = 10.000000000000
area_um soft limit = False
aspect max = 3.000000000000
aspect min = 1.000000000000
aspect soft limit = True
deform max = 0.200000002980
deform min = 0.000000000000
deform soft limit = True
size_x max = 80
size_x min = 1
size_x soft limit = False
size_y max = 80
size_y min = 1
size_y soft limit = False
[setup]
channel width = 20.000000000000
chip region = channel
flow rate = 0.059999998659
flow rate sample = 0.014999999665
flow rate sheath = 0.045000001788
identifier = ZMDD-AcC-774f84-3da488
medium = CellCarrierB
module composition = AcCellerator,FluorescenceModule
software version = 2.1.1.0
temperature = 25.700000762939
dckit-history
[
{
"libraries": {
"dckit": "0.12.16",
"dclab": "0.38.2",
"h5py": "3.5.0",
"imageio": "2.10.3",
"nptdms": "1.4.0",
"numpy": "1.19.3"
},
"python": {
"build": "tags/v3.8.0:fa919fd, Oct 14 2019 19:37:50",
"implementation": "CPython",
"version": "3.8.0"
},
"system": {
"info": "Windows-10-10.0.18362-SP0",
"machine": "AMD64",
"name": "Windows",
"release": "10",
"version": "10.0.18362"
},
"task": {
"name": "update metadata",
"new": {
"experiment:sample": "KO_S13__tumour"
},
"old": {
"experiment:sample": "Comb_No13_RhoA_Colon_CD45_Epcam"
}
},
"utc": {
"date": "2021-11-30",
"time": "08:24:37"
}
},
{
"libraries": {
"dckit": "0.12.16",
"dclab": "0.38.2",
"h5py": "3.5.0",
"imageio": "2.10.3",
"nptdms": "1.4.0",
"numpy": "1.19.3"
},
"python": {
"build": "tags/v3.8.0:fa919fd, Oct 14 2019 19:37:50",
"implementation": "CPython",
"version": "3.8.0"
},
"system": {
"info": "Windows-10-10.0.18362-SP0",
"machine": "AMD64",
"name": "Windows",
"release": "10",
"version": "10.0.18362"
},
"task": {
"name": "update metadata",
"new": {
"experiment:sample": "KO_S13_tumour"
},
"old": {
"experiment:sample": "KO_S13__tumour"
}
},
"utc": {
"date": "2021-11-30",
"time": "08:24:53"
}
},
{
"libraries": {
"dckit": "0.12.16",
"dclab": "0.38.2",
"h5py": "3.5.0",
"imageio": "2.10.3",
"nptdms": "1.4.0",
"numpy": "1.19.3"
},
"python": {
"build": "tags/v3.8.0:fa919fd, Oct 14 2019 19:37:50",
"implementation": "CPython",
"version": "3.8.0"
},
"system": {
"info": "Windows-10-10.0.18362-SP0",
"machine": "AMD64",
"name": "Windows",
"release": "10",
"version": "10.0.18362"
},
"task": {
"name": "compress HDF5 data"
},
"utc": {
"date": "2021-11-30",
"time": "09:03:10"
}
},
{
"libraries": {
"dckit": "0.14.5",
"dclab": "0.47.0",
"h5py": "3.7.0",
"imageio": "2.10.3",
"nptdms": "1.6.0",
"numpy": "1.23.5"
},
"python": {
"build": "tags/v3.8.0:fa919fd, Oct 14 2019 19:37:50",
"implementation": "CPython",
"version": "3.8.0"
},
"system": {
"info": "Windows-10-10.0.18362-SP0",
"machine": "AMD64",
"name": "Windows",
"release": "10",
"version": "10.0.18362"
},
"task": {
"name": "update metadata",
"new": {
"experiment:sample": "Tumour_S12"
},
"old": {
"experiment:sample": "KO_S13_tumour"
}
},
"utc": {
"date": "2023-01-18",
"time": "22:40:25"
}
}
] dclab-compress
{
"files": [
{
"index": 1,
"md5-5M": "bdecde3eea5826a052e3d84f8b489e6e",
"name": "Tumour_S12.rtdc"
}
],
"libraries": {
"dclab": "0.47.2",
"h5py": "3.7.0",
"numpy": "1.23.5"
},
"python": {
"build": "tags/v3.9.13:6de2ca5, May 17 2022 16:36:42",
"implementation": "CPython",
"version": "3.9.13"
},
"system": {
"info": "Windows-10-10.0.18363-SP0",
"machine": "AMD64",
"name": "Windows",
"release": "10",
"version": "10.0.18363"
},
"utc": {
"date": "2023-01-19",
"time": "22:22:12"
}
} dclab-compress-warnings
WrongConfigurationTypeWarning
in dclab.rtdc_dataset.config line 77:
Type of confguration key [fluorescence]: sample rate should be <class 'numbers.Integral'>, got
<class 'numpy.float64'>!
WrongConfigurationTypeWarning
in dclab.rtdc_dataset.config line 77:
Type of confguration key [imaging]: roi position x should be <class 'numbers.Integral'>, got
<class 'numpy.float64'>!
WrongConfigurationTypeWarning
in dclab.rtdc_dataset.config line 77:
Type of confguration key [imaging]: roi position y should be <class 'numbers.Integral'>, got
<class 'numpy.float64'>! dclab-join
{
"files": [
{
"index": 1,
"name": "M001_data.rtdc",
"sha256": "694bdc89d6dda45f98d87d10bdd5e6ecf859cc5f12f43350e2b2d0995d18de0c"
},
{
"index": 2,
"name": "M002_data.rtdc",
"sha256": "9a16e2a728b9268f2a4001250e761e56e1d8d09abdbf136afbdff39d88d8aeb1"
},
{
"index": 3,
"name": "M003_data.rtdc",
"sha256": "4719e5592f6825dbe862a9d686f5a8b7b3f0dddc0ece573d00c58e69a3bb27eb"
},
{
"index": 4,
"name": "M004_data.rtdc",
"sha256": "b575dd3a86f87df5feccbeda7b8c2e533ca32c1eb2eee90cc6979f34a2c5546a"
},
{
"index": 5,
"name": "M005_data.rtdc",
"sha256": "1a8c6b8315a2a5cf689d36c9ce1f0a92cbef4bec15b9952c03022fb4cc51bcb6"
},
{
"index": 6,
"name": "M006_data.rtdc",
"sha256": "bd50931e84246f61b9ce62fc47c579a01cc63fc23f11844556a6a00081b803d2"
}
],
"libraries": {
"dclab": "0.28.0",
"h5py": "2.10.0",
"imageio": "2.9.0",
"nptdms": "1.0.0",
"numpy": "1.19.2"
},
"python": {
"build": "tags/v3.6.8:3c6b436a57, Dec 24 2018 00:16:47",
"implementation": "CPython",
"version": "3.6.8"
},
"system": {
"info": "Windows-10-10.0.17763-SP0",
"machine": "AMD64",
"name": "Windows",
"release": "10",
"version": "10.0.17763"
},
"utc": {
"date": "2020-10-01",
"time": "14:55:50"
}
} src-#1_log
[LOG] number of written datasets 0
[LOG] number of written datasets 1000
[LOG] number of written datasets 2000 src-#2_log
[LOG] number of written datasets 0
[LOG] number of written datasets 1000
[LOG] number of written datasets 2000 src-#3_log
[LOG] number of written datasets 0
[LOG] number of written datasets 1000
[LOG] number of written datasets 2000
[LOG] number of written datasets 3000
[LOG] number of written datasets 4000
[LOG] number of written datasets 5000
[LOG] number of written datasets 6000
[LOG] number of written datasets 7000
[LOG] number of written datasets 8000
[LOG] number of written datasets 9000
[LOG] number of written datasets 10000
[LOG] number of written datasets 11000
[LOG] number of written datasets 12000
[LOG] number of written datasets 13000
[LOG] number of written datasets 14000
[LOG] number of written datasets 15000
[LOG] number of written datasets 16000
[LOG] number of written datasets 17000
[LOG] number of written datasets 18000
[LOG] number of written datasets 19000 src-#4_log
[LOG] number of written datasets 0
[LOG] number of written datasets 1000
[LOG] number of written datasets 2000
[LOG] number of written datasets 3000
[LOG] number of written datasets 4000
[LOG] number of written datasets 5000
[LOG] number of written datasets 6000 src-#5_log
[LOG] number of written datasets 0
[LOG] number of written datasets 1000
[LOG] number of written datasets 2000
[LOG] number of written datasets 3000
[LOG] number of written datasets 4000 src-#6_log
[LOG] number of written datasets 0
[LOG] number of written datasets 1000
[LOG] number of written datasets 2000
[LOG] number of written datasets 3000
[LOG] number of written datasets 4000
[LOG] number of written datasets 5000
[LOG] number of written datasets 6000
[LOG] number of written datasets 7000
[LOG] number of written datasets 8000
[LOG] number of written datasets 9000
[LOG] number of written datasets 10000
[LOG] number of written datasets 11000
[LOG] number of written datasets 12000
[LOG] number of written datasets 13000