Click on the log titles below to expand the log entries present in this DC resource.
dclab-export_2024-07-09_20.01.32
{"dclab version": [0, 60, 3], "kwargs": {"features": ["area_cvx", "area_msd", "circ", "contour", "fl1_area", "fl1_dist", "fl1_max", "fl1_npeaks", "fl1_pos", "fl1_width", "fl2_area", "fl2_dist", "fl2_max", "fl2_npeaks", "fl2_pos", "fl2_width", "frame", "image", "inert_ratio_cvx", "inert_ratio_raw", "mask", "nevents", "pos_x", "pos_y", "size_x", "size_y", "trace"], "filtered": true, "logs": false, "tables": false, "basins": false, "meta_prefix": "src_", "skip_checks": false}}
dclab-tdms2rtdc
{
"ancillary features": [
"mask"
],
"files": [
{
"index": 1,
"md5-5M": "e8c55452932976e71a4422894c52bc46",
"name": "M1_20170523_1639_dsRNA_G5_faster.tdms"
}
],
"libraries": {
"dclab": "0.60.3",
"h5py": "3.11.0",
"imageio": "2.34.2",
"nptdms": "1.8.0",
"numpy": "1.26.4"
},
"python": {
"build": "tags/v3.11.1:a7a450f, Dec 6 2022 19:58:39",
"implementation": "CPython",
"version": "3.11.1"
},
"system": {
"info": "Windows-10-10.0.19045-SP0",
"machine": "AMD64",
"name": "Windows",
"release": "10",
"version": "10.0.19045"
},
"utc": {
"date": "2024-07-09",
"time": "18:01:56"
}
}
dclab-tdms2rtdc-warnings
LimitingExportSizeWarning
in dclab.rtdc_dataset.export line 305:
Not all features have the same length! Limiting output event count to 9999 (max 10000) in
'9999'.
FG_Config.mcf
[Kamerasektion]
ConfigFileVersion=2.0;
Hersteller='Generic-CameraLink';
Typ='vas';
HapName='C:/Lib/SiliconSoftware/Runtime5.4.1/Hardware Applets/mE4VD4-CL/PR_BG_subtr_141204_ext_trig_noerode.hap';
Version='1.5';
LoadAppletId=0;
AktivePort=0;
[ID0]
FG_WIDTH=256;
FG_HEIGHT=96;
FG_TIMEOUT=1000000;
FG_FORMAT=3;
FG_PORT=0;
FG_GLOBAL_ACCESS=0;
Device1_Process0_UpperBits_BitOffset=4;
Device1_Process0_module9_SyncMode=0;
Device1_Process0_Camera_DvalMode=1;
Device1_Process0_Camera_FullMode=0;
Device1_Process0_DMA_PixelsPerLine=0;
Device1_Process0_DMA_BytesPerLine=0;
Device1_Process0_LowerBits_BitOffset=0;
Device1_Process0_Buffer1_XOffset=0;
Device1_Process0_Buffer1_XLength=256;
Device1_Process0_Buffer1_YOffset=0;
Device1_Process0_Buffer1_YLength=96;
Device1_Process0_Buffer1_FillLevel=75;
Device1_Process0_Buffer1_Overflow=0;
Device1_Process0_Buffer1_InfiniteSource=0;
Device1_Process0_Buffer0_XOffset=0;
Device1_Process0_Buffer0_XLength=256;
Device1_Process0_Buffer0_YOffset=0;
Device1_Process0_Buffer0_YLength=96;
Device1_Process0_Buffer0_FillLevel=75;
Device1_Process0_Buffer0_Overflow=0;
Device1_Process0_Buffer0_InfiniteSource=0;
Device1_Process0_module12_BufferWidth=400;
Device1_Process0_module12_BufferHeight=96;
Device1_Process0_module12_XOffset=0;
Device1_Process0_module12_XLength=256;
Device1_Process0_module12_YOffset=0;
Device1_Process0_module12_YLength=96;
Device1_Process0_module12_UpdateROI=1;
Device1_Process0_module12_CoefficientFile 0='coefficients_0.tif';
Device1_Process0_module12_LoadCoefficients=1;
Device1_Process0_module13_SyncMode=0;
Device1_Process0_module16_from=18446744073709551360;
Device1_Process0_module16_to=18446744073709551610;
Device1_Process0_module17_Value=0;
Device1_Process0_module20_PixelsPerLine=0;
Device1_Process0_module20_BytesPerLine=0;
Device1_Process0_module21_Number=0;
Device1_Process0_module26_ScaleFactorMaxBits=8;
Device1_Process0_module26_ScaleFactor=255;
Device1_Process0_module28_TriggerMode=2;
Device1_Process0_module28_ExsyncEnable=1;
Device1_Process0_module28_FlashEnable=1;
Device1_Process0_module28_SoftwareTrgPulse=1;
Device1_Process0_module28_SoftwareTrgIsBusy=0;
Device1_Process0_module28_ImgTrgInSource=0;
Device1_Process0_module28_ImgTrgInPolarity=0;
Device1_Process0_module28_ImgTrgDownscale=1;
Device1_Process0_module28_Accuracy=2;
Device1_Process0_module28_ExsyncFramesPerSec=2000;
Device1_Process0_module28_ExsyncExposure=20;
Device1_Process0_module28_ExsyncDelay=0;
Device1_Process0_module28_ExsyncPolarity=0;
Device1_Process0_module28_FlashDelay=0;
Device1_Process0_module28_SoftwareTrgDeadTime=10000;
Device1_Process0_module28_FlashPolarity=1;
Device1_Process0_module28_CC1output=0;
Device1_Process0_module28_CC2output=8;
Device1_Process0_module28_CC3output=8;
Device1_Process0_module28_CC4output=8;
Device1_Process0_module28_DebouncingMaxTime=65.52;
Device1_Process0_module28_DebouncingTime=0.112;
[ID1]
FG_WIDTH=256;
FG_HEIGHT=96;
FG_TIMEOUT=1000000;
FG_FORMAT=3;
M1_camera.ini
[Framerate]
Shutter Time = 20
Frame Rate = 2000
Tap Mode = 8x8 Bit
Tap Code = 6
[ROI]
x-pos = 504
y-pos = 472
width = 256
height = 96
M1_log.ini
[EVENT LOG] fRT-DC V1.06170206
Reset global variables..
Circular Buffer Size is: 1000000
Ambient Temperature [C] = 25.1087
Start pulse train for BG Aquisition..
Now refreshing the background image stored in the framegrabber
STATE: 3
Starting time: 7.21007e+008
Use analog input: pci/ai4,pci/ai5
Samplerate per channel: 500000
Buffersize in byte: 1000000
Rising Edge, Continuous Sampling
N_callback: 125
Callbacks per frame: 2
Callback registered
Configure tasks for online measurement..
Timing: start directly
Freq: 2000
Duty cycle: 0.5
Reset global variables: i0, i1, samplesThisRun
Start the Fragegrabber ..
Start the NI-DAQ Card..
Stop after time: 0
Stop after nr. of cells: 10000
Ran for 1050 frames Cell Events: 48 mean_circ: 0.901159
Ran for 1550 frames Cell Events: 60 mean_circ: 0.901158
Ran for 2050 frames Cell Events: 78 mean_circ: 0.895711
Ran for 2550 frames Cell Events: 90 mean_circ: 0.89789
Ran for 3050 frames Cell Events: 102 mean_circ: 0.90135
Ran for 5550 frames Cell Events: 206 mean_circ: 0.908488
Ran for 6050 frames Cell Events: 214 mean_circ: 0.909445
Ran for 7550 frames Cell Events: 240 mean_circ: 0.910178
Ran for 8050 frames Cell Events: 256 mean_circ: 0.91047
Ran for 8550 frames Cell Events: 267 mean_circ: 0.911026
Ran for 9050 frames Cell Events: 283 mean_circ: 0.912049
Ran for 9550 frames Cell Events: 295 mean_circ: 0.912361
Ran for 10050 frames Cell Events: 311 mean_circ: 0.912843
Ran for 10550 frames Cell Events: 325 mean_circ: 0.912983
Ran for 11050 frames Cell Events: 342 mean_circ: 0.913014
Ran for 11550 frames Cell Events: 355 mean_circ: 0.912129
Ran for 12050 frames Cell Events: 365 mean_circ: 0.912576
Ran for 12550 frames Cell Events: 380 mean_circ: 0.911459
Ran for 13050 frames Cell Events: 398 mean_circ: 0.911255
Ran for 13550 frames Cell Events: 410 mean_circ: 0.911741
Ran for 14050 frames Cell Events: 427 mean_circ: 0.912
Ran for 15550 frames Cell Events: 487 mean_circ: 0.910582
Ran for 16050 frames Cell Events: 501 mean_circ: 0.909945
Ran for 16550 frames Cell Events: 517 mean_circ: 0.910218
Ran for 17050 frames Cell Events: 539 mean_circ: 0.910038
Ran for 17550 frames Cell Events: 551 mean_circ: 0.909211
Ran for 18050 frames Cell Events: 563 mean_circ: 0.909702
Ran for 18550 frames Cell Events: 579 mean_circ: 0.910273
Ran for 19050 frames Cell Events: 589 mean_circ: 0.910291
Ran for 19550 frames Cell Events: 603 mean_circ: 0.909924
Ran for 20050 frames Cell Events: 610 mean_circ: 0.910047
Ran for 21050 frames Cell Events: 639 mean_circ: 0.910333
Ran for 22050 frames Cell Events: 673 mean_circ: 0.911012
Ran for 22550 frames Cell Events: 692 mean_circ: 0.91107
Ran for 23050 frames Cell Events: 705 mean_circ: 0.911454
Ran for 24050 frames Cell Events: 740 mean_circ: 0.910976
Ran for 24550 frames Cell Events: 751 mean_circ: 0.911131
Ran for 25050 frames Cell Events: 770 mean_circ: 0.911928
Ran for 25550 frames Cell Events: 792 mean_circ: 0.912537
Ran for 26050 frames Cell Events: 808 mean_circ: 0.912822
Ran for 26550 frames Cell Events: 827 mean_circ: 0.913183
Ran for 27050 frames Cell Events: 849 mean_circ: 0.913117
Ran for 27550 frames Cell Events: 864 mean_circ: 0.913364
Ran for 28550 frames Cell Events: 893 mean_circ: 0.91326
Ran for 29050 frames Cell Events: 925 mean_circ: 0.913351
Ran for 29550 frames Cell Events: 941 mean_circ: 0.913403
Ran for 30050 frames Cell Events: 956 mean_circ: 0.913223
Ran for 30550 frames Cell Events: 972 mean_circ: 0.913411
Ran for 31050 frames Cell Events: 993 mean_circ: 0.912904
Ran for 31550 frames Cell Events: 1010 mean_circ: 0.912884
Ran for 32050 frames Cell Events: 1029 mean_circ: 0.912928
Ran for 32550 frames Cell Events: 1039 mean_circ: 0.913133
Ran for 33050 frames Cell Events: 1055 mean_circ: 0.912798
Ran for 33550 frames Cell Events: 1070 mean_circ: 0.91297
Ran for 34050 frames Cell Events: 1085 mean_circ: 0.913088
Ran for 35050 frames Cell Events: 1104 mean_circ: 0.913241
Ran for 35550 frames Cell Events: 1118 mean_circ: 0.913216
Ran for 36050 frames Cell Events: 1140 mean_circ: 0.913352
Ran for 38050 frames Cell Events: 1217 mean_circ: 0.912964
Ran for 38550 frames Cell Events: 1234 mean_circ: 0.912659
Ran for 39050 frames Cell Events: 1254 mean_circ: 0.912689
Ran for 40050 frames Cell Events: 1282 mean_circ: 0.912254
Ran for 40550 frames Cell Events: 1298 mean_circ: 0.91225
Ran for 41050 frames Cell Events: 1308 mean_circ: 0.912079
Ran for 42050 frames Cell Events: 1332 mean_circ: 0.911954
Ran for 42550 frames Cell Events: 1339 mean_circ: 0.912094
Ran for 43050 frames Cell Events: 1355 mean_circ: 0.911851
Ran for 43550 frames Cell Events: 1379 mean_circ: 0.911886
Ran for 44550 frames Cell Events: 1432 mean_circ: 0.912042
Ran for 45050 frames Cell Events: 1447 mean_circ: 0.912036
Ran for 46050 frames Cell Events: 1488 mean_circ: 0.912178
Ran for 46550 frames Cell Events: 1497 mean_circ: 0.911513
Ran for 47050 frames Cell Events: 1512 mean_circ: 0.911466
Ran for 47550 frames Cell Events: 1527 mean_circ: 0.91163
Ran for 48550 frames Cell Events: 1559 mean_circ: 0.911347
Ran for 49550 frames Cell Events: 1585 mean_circ: 0.911025
Ran for 50050 frames Cell Events: 1594 mean_circ: 0.911159
Ran for 50550 frames Cell Events: 1607 mean_circ: 0.911231
Ran for 51050 frames Cell Events: 1629 mean_circ: 0.911317
Ran for 51550 frames Cell Events: 1638 mean_circ: 0.911048
Ran for 52050 frames Cell Events: 1654 mean_circ: 0.911112
Ran for 52550 frames Cell Events: 1668 mean_circ: 0.911258
Ran for 53050 frames Cell Events: 1682 mean_circ: 0.911395
Ran for 53550 frames Cell Events: 1700 mean_circ: 0.911165
Ran for 54550 frames Cell Events: 1735 mean_circ: 0.911072
Ran for 55550 frames Cell Events: 1763 mean_circ: 0.910938
Ran for 56050 frames Cell Events: 1775 mean_circ: 0.911115
Ran for 56550 frames Cell Events: 1788 mean_circ: 0.910777
Ran for 57050 frames Cell Events: 1803 mean_circ: 0.910775
Ran for 57550 frames Cell Events: 1816 mean_circ: 0.910815
Ran for 58050 frames Cell Events: 1832 mean_circ: 0.910893
Ran for 58550 frames Cell Events: 1850 mean_circ: 0.910764
Ran for 59050 frames Cell Events: 1859 mean_circ: 0.910823
Ran for 59550 frames Cell Events: 1872 mean_circ: 0.910335
Ran for 60050 frames Cell Events: 1895 mean_circ: 0.910434
Ran for 60550 frames Cell Events: 1914 mean_circ: 0.910608
Ran for 61050 frames Cell Events: 1928 mean_circ: 0.910697
Ran for 61550 frames Cell Events: 1944 mean_circ: 0.910816
Ran for 62050 frames Cell Events: 1969 mean_circ: 0.910923
Ran for 63050 frames Cell Events: 1995 mean_circ: 0.910821
Ran for 63550 frames Cell Events: 2012 mean_circ: 0.910901
Ran for 64050 frames Cell Events: 2039 mean_circ: 0.910928
Ran for 65050 frames Cell Events: 2073 mean_circ: 0.910713
Ran for 65550 frames Cell Events: 2087 mean_circ: 0.910795
Ran for 66050 frames Cell Events: 2102 mean_circ: 0.91073
Ran for 66550 frames Cell Events: 2121 mean_circ: 0.910923
Ran for 67050 frames Cell Events: 2134 mean_circ: 0.910756
Ran for 67550 frames Cell Events: 2154 mean_circ: 0.910561
Ran for 68050 frames Cell Events: 2165 mean_circ: 0.910369
Ran for 68550 frames Cell Events: 2181 mean_circ: 0.910439
Ran for 69050 frames Cell Events: 2197 mean_circ: 0.910455
Ran for 69550 frames Cell Events: 2211 mean_circ: 0.91052
Ran for 70550 frames Cell Events: 2252 mean_circ: 0.910771
Ran for 71050 frames Cell Events: 2269 mean_circ: 0.91074
Ran for 71550 frames Cell Events: 2288 mean_circ: 0.910539
Ran for 72050 frames Cell Events: 2305 mean_circ: 0.910665
Ran for 72550 frames Cell Events: 2314 mean_circ: 0.910766
Ran for 73050 frames Cell Events: 2327 mean_circ: 0.910797
Ran for 73550 frames Cell Events: 2346 mean_circ: 0.910716
Ran for 74050 frames Cell Events: 2359 mean_circ: 0.910877
Ran for 75550 frames Cell Events: 2397 mean_circ: 0.910887
Ran for 76550 frames Cell Events: 2434 mean_circ: 0.910881
Ran for 77050 frames Cell Events: 2449 mean_circ: 0.911016
Ran for 77550 frames Cell Events: 2478 mean_circ: 0.910914
Ran for 78550 frames Cell Events: 2524 mean_circ: 0.911041
Ran for 79550 frames Cell Events: 2565 mean_circ: 0.911336
Ran for 80050 frames Cell Events: 2580 mean_circ: 0.911515
Ran for 80550 frames Cell Events: 2608 mean_circ: 0.911259
Ran for 81050 frames Cell Events: 2618 mean_circ: 0.911339
Ran for 81550 frames Cell Events: 2641 mean_circ: 0.911519
Ran for 83050 frames Cell Events: 2700 mean_circ: 0.911389
Ran for 84050 frames Cell Events: 2735 mean_circ: 0.911518
Ran for 84550 frames Cell Events: 2748 mean_circ: 0.911501
Ran for 85050 frames Cell Events: 2755 mean_circ: 0.911295
Ran for 85550 frames Cell Events: 2772 mean_circ: 0.911335
Ran for 86050 frames Cell Events: 2779 mean_circ: 0.911564
Ran for 86550 frames Cell Events: 2794 mean_circ: 0.911626
Ran for 87050 frames Cell Events: 2813 mean_circ: 0.911433
Ran for 87550 frames Cell Events: 2820 mean_circ: 0.911452
Ran for 88050 frames Cell Events: 2839 mean_circ: 0.911413
Ran for 88550 frames Cell Events: 2857 mean_circ: 0.911447
Ran for 90050 frames Cell Events: 2908 mean_circ: 0.911408
Ran for 90550 frames Cell Events: 2918 mean_circ: 0.91136
Ran for 92050 frames Cell Events: 2986 mean_circ: 0.911535
Ran for 93050 frames Cell Events: 3020 mean_circ: 0.911532
Ran for 94050 frames Cell Events: 3043 mean_circ: 0.911423
Ran for 94550 frames Cell Events: 3057 mean_circ: 0.911421
Ran for 95050 frames Cell Events: 3072 mean_circ: 0.911369
Ran for 95550 frames Cell Events: 3085 mean_circ: 0.911455
Ran for 96050 frames Cell Events: 3101 mean_circ: 0.911327
Ran for 96550 frames Cell Events: 3120 mean_circ: 0.911386
Ran for 97050 frames Cell Events: 3141 mean_circ: 0.911341
Ran for 98050 frames Cell Events: 3185 mean_circ: 0.911225
Ran for 98550 frames Cell Events: 3216 mean_circ: 0.911241
Ran for 99550 frames Cell Events: 3237 mean_circ: 0.911244
Ran for 100050 frames Cell Events: 3254 mean_circ: 0.911302
Ran for 100550 frames Cell Events: 3267 mean_circ: 0.911384
Ran for 101550 frames Cell Events: 3316 mean_circ: 0.911266
Ran for 102550 frames Cell Events: 3345 mean_circ: 0.911357
Ran for 103050 frames Cell Events: 3368 mean_circ: 0.911327
Ran for 103550 frames Cell Events: 3380 mean_circ: 0.911177
Ran for 104050 frames Cell Events: 3393 mean_circ: 0.911116
Ran for 104550 frames Cell Events: 3414 mean_circ: 0.911123
Ran for 105050 frames Cell Events: 3423 mean_circ: 0.911033
Ran for 105550 frames Cell Events: 3436 mean_circ: 0.911006
Ran for 106050 frames Cell Events: 3460 mean_circ: 0.911025
Ran for 106550 frames Cell Events: 3475 mean_circ: 0.91112
Ran for 107050 frames Cell Events: 3490 mean_circ: 0.911183
Ran for 108050 frames Cell Events: 3522 mean_circ: 0.911217
Ran for 108550 frames Cell Events: 3538 mean_circ: 0.911306
Ran for 109050 frames Cell Events: 3549 mean_circ: 0.911298
Ran for 110050 frames Cell Events: 3576 mean_circ: 0.911104
Ran for 110550 frames Cell Events: 3609 mean_circ: 0.911096
Ran for 111050 frames Cell Events: 3624 mean_circ: 0.911144
Ran for 111550 frames Cell Events: 3643 mean_circ: 0.911202
Ran for 112050 frames Cell Events: 3657 mean_circ: 0.9112
Ran for 113050 frames Cell Events: 3690 mean_circ: 0.911308
Ran for 113550 frames Cell Events: 3704 mean_circ: 0.911192
Ran for 114050 frames Cell Events: 3721 mean_circ: 0.911286
Ran for 114550 frames Cell Events: 3751 mean_circ: 0.911331
Ran for 115050 frames Cell Events: 3763 mean_circ: 0.911335
Ran for 116050 frames Cell Events: 3834 mean_circ: 0.911221
Ran for 117050 frames Cell Events: 3860 mean_circ: 0.911319
Ran for 118550 frames Cell Events: 3912 mean_circ: 0.91114
Ran for 119050 frames Cell Events: 3935 mean_circ: 0.911105
Ran for 119550 frames Cell Events: 3952 mean_circ: 0.911095
Ran for 120050 frames Cell Events: 3963 mean_circ: 0.910955
Ran for 120550 frames Cell Events: 3977 mean_circ: 0.910953
Ran for 121050 frames Cell Events: 3996 mean_circ: 0.910986
Ran for 121550 frames Cell Events: 4012 mean_circ: 0.911138
Ran for 122550 frames Cell Events: 4023 mean_circ: 0.911186
Ran for 123050 frames Cell Events: 4041 mean_circ: 0.911069
Ran for 123550 frames Cell Events: 4053 mean_circ: 0.911113
Ran for 124550 frames Cell Events: 4097 mean_circ: 0.910923
Ran for 125050 frames Cell Events: 4109 mean_circ: 0.911051
Ran for 125550 frames Cell Events: 4126 mean_circ: 0.911134
Ran for 126050 frames Cell Events: 4143 mean_circ: 0.911044
Ran for 126550 frames Cell Events: 4157 mean_circ: 0.911074
Ran for 127050 frames Cell Events: 4172 mean_circ: 0.911119
Ran for 127550 frames Cell Events: 4191 mean_circ: 0.911067
Ran for 128550 frames Cell Events: 4236 mean_circ: 0.911127
Ran for 129050 frames Cell Events: 4249 mean_circ: 0.911126
Ran for 129550 frames Cell Events: 4264 mean_circ: 0.911175
Ran for 132550 frames Cell Events: 4359 mean_circ: 0.911202
Ran for 133550 frames Cell Events: 4392 mean_circ: 0.911299
Ran for 134550 frames Cell Events: 4432 mean_circ: 0.91121
Ran for 135050 frames Cell Events: 4456 mean_circ: 0.911278
Ran for 136050 frames Cell Events: 4469 mean_circ: 0.911294
Ran for 136550 frames Cell Events: 4483 mean_circ: 0.911343
Ran for 137050 frames Cell Events: 4493 mean_circ: 0.911348
Ran for 137550 frames Cell Events: 4505 mean_circ: 0.911385
Ran for 138550 frames Cell Events: 4532 mean_circ: 0.911424
Ran for 139550 frames Cell Events: 4582 mean_circ: 0.911122
Ran for 140050 frames Cell Events: 4602 mean_circ: 0.911136
Ran for 140550 frames Cell Events: 4613 mean_circ: 0.911207
Ran for 141050 frames Cell Events: 4630 mean_circ: 0.911204
Ran for 143550 frames Cell Events: 4706 mean_circ: 0.911254
Ran for 144550 frames Cell Events: 4758 mean_circ: 0.911158
Ran for 145550 frames Cell Events: 4786 mean_circ: 0.911093
Ran for 147550 frames Cell Events: 4868 mean_circ: 0.911097
Ran for 148050 frames Cell Events: 4887 mean_circ: 0.911155
Ran for 149550 frames Cell Events: 4939 mean_circ: 0.911108
Ran for 150550 frames Cell Events: 4987 mean_circ: 0.911124
Ran for 151050 frames Cell Events: 5002 mean_circ: 0.911175
Ran for 151550 frames Cell Events: 5026 mean_circ: 0.911078
Ran for 152050 frames Cell Events: 5047 mean_circ: 0.911099
Ran for 153050 frames Cell Events: 5082 mean_circ: 0.911052
Ran for 153550 frames Cell Events: 5090 mean_circ: 0.911055
Ran for 154050 frames Cell Events: 5106 mean_circ: 0.91103
Ran for 155050 frames Cell Events: 5127 mean_circ: 0.911055
Ran for 155550 frames Cell Events: 5139 mean_circ: 0.911109
Ran for 156050 frames Cell Events: 5160 mean_circ: 0.911097
Ran for 157050 frames Cell Events: 5197 mean_circ: 0.91103
Ran for 157550 frames Cell Events: 5211 mean_circ: 0.911029
Ran for 158050 frames Cell Events: 5233 mean_circ: 0.911057
Ran for 158550 frames Cell Events: 5249 mean_circ: 0.911078
Ran for 159050 frames Cell Events: 5271 mean_circ: 0.911075
Ran for 159550 frames Cell Events: 5282 mean_circ: 0.911027
Ran for 160050 frames Cell Events: 5299 mean_circ: 0.911086
Ran for 161050 frames Cell Events: 5349 mean_circ: 0.911144
Ran for 161550 frames Cell Events: 5362 mean_circ: 0.911093
Ran for 162050 frames Cell Events: 5375 mean_circ: 0.911118
Ran for 162550 frames Cell Events: 5391 mean_circ: 0.911232
Ran for 163050 frames Cell Events: 5405 mean_circ: 0.911239
Ran for 163550 frames Cell Events: 5421 mean_circ: 0.911233
Ran for 164050 frames Cell Events: 5439 mean_circ: 0.911301
Ran for 164550 frames Cell Events: 5447 mean_circ: 0.911351
Ran for 165550 frames Cell Events: 5470 mean_circ: 0.911387
Ran for 166050 frames Cell Events: 5485 mean_circ: 0.91138
Ran for 166550 frames Cell Events: 5502 mean_circ: 0.911456
Ran for 167050 frames Cell Events: 5519 mean_circ: 0.911479
Ran for 167550 frames Cell Events: 5531 mean_circ: 0.911518
Ran for 168050 frames Cell Events: 5548 mean_circ: 0.911565
Ran for 168550 frames Cell Events: 5566 mean_circ: 0.911489
Ran for 169050 frames Cell Events: 5580 mean_circ: 0.911491
Ran for 169550 frames Cell Events: 5602 mean_circ: 0.911531
Ran for 170050 frames Cell Events: 5614 mean_circ: 0.911521
Ran for 171050 frames Cell Events: 5641 mean_circ: 0.911523
Ran for 172050 frames Cell Events: 5677 mean_circ: 0.91156
Ran for 172550 frames Cell Events: 5692 mean_circ: 0.911538
Ran for 173050 frames Cell Events: 5705 mean_circ: 0.9116
Ran for 173550 frames Cell Events: 5717 mean_circ: 0.911628
Ran for 174050 frames Cell Events: 5736 mean_circ: 0.911643
Ran for 175050 frames Cell Events: 5775 mean_circ: 0.911733
Ran for 175550 frames Cell Events: 5797 mean_circ: 0.911717
Ran for 176550 frames Cell Events: 5831 mean_circ: 0.911685
Ran for 177050 frames Cell Events: 5852 mean_circ: 0.911735
Ran for 177550 frames Cell Events: 5871 mean_circ: 0.911689
Ran for 178050 frames Cell Events: 5885 mean_circ: 0.911748
Ran for 179550 frames Cell Events: 5916 mean_circ: 0.911773
Ran for 181050 frames Cell Events: 5973 mean_circ: 0.911722
Ran for 182050 frames Cell Events: 6007 mean_circ: 0.9117
Ran for 182550 frames Cell Events: 6025 mean_circ: 0.911688
Ran for 184550 frames Cell Events: 6098 mean_circ: 0.91155
Ran for 186050 frames Cell Events: 6152 mean_circ: 0.911583
Ran for 186550 frames Cell Events: 6164 mean_circ: 0.911609
Ran for 187050 frames Cell Events: 6186 mean_circ: 0.911617
Ran for 187550 frames Cell Events: 6210 mean_circ: 0.911471
Ran for 188550 frames Cell Events: 6250 mean_circ: 0.91148
Ran for 189050 frames Cell Events: 6265 mean_circ: 0.911523
Ran for 189550 frames Cell Events: 6281 mean_circ: 0.911518
Ran for 190550 frames Cell Events: 6315 mean_circ: 0.911534
Ran for 191050 frames Cell Events: 6331 mean_circ: 0.91154
Ran for 191550 frames Cell Events: 6352 mean_circ: 0.911551
Ran for 192050 frames Cell Events: 6367 mean_circ: 0.911648
Ran for 193050 frames Cell Events: 6397 mean_circ: 0.911696
Ran for 194550 frames Cell Events: 6454 mean_circ: 0.911757
Ran for 195550 frames Cell Events: 6497 mean_circ: 0.911804
Ran for 196050 frames Cell Events: 6509 mean_circ: 0.911799
Ran for 198050 frames Cell Events: 6578 mean_circ: 0.91193
Ran for 198550 frames Cell Events: 6590 mean_circ: 0.911899
Ran for 199050 frames Cell Events: 6614 mean_circ: 0.91188
Ran for 199550 frames Cell Events: 6621 mean_circ: 0.911904
Ran for 200050 frames Cell Events: 6640 mean_circ: 0.911942
Ran for 200550 frames Cell Events: 6662 mean_circ: 0.911958
Ran for 201050 frames Cell Events: 6681 mean_circ: 0.911944
Ran for 202050 frames Cell Events: 6727 mean_circ: 0.911915
Ran for 202550 frames Cell Events: 6752 mean_circ: 0.911804
Ran for 203050 frames Cell Events: 6772 mean_circ: 0.911792
Ran for 204050 frames Cell Events: 6807 mean_circ: 0.911845
Ran for 204550 frames Cell Events: 6832 mean_circ: 0.911869
Ran for 205050 frames Cell Events: 6849 mean_circ: 0.911915
Ran for 205550 frames Cell Events: 6863 mean_circ: 0.911874
Ran for 206050 frames Cell Events: 6883 mean_circ: 0.911913
Ran for 207050 frames Cell Events: 6927 mean_circ: 0.911973
Ran for 207550 frames Cell Events: 6944 mean_circ: 0.912043
Ran for 208050 frames Cell Events: 6957 mean_circ: 0.912059
Ran for 209050 frames Cell Events: 6981 mean_circ: 0.912026
Ran for 209550 frames Cell Events: 6990 mean_circ: 0.912016
Ran for 210550 frames Cell Events: 7027 mean_circ: 0.912014
Ran for 211550 frames Cell Events: 7064 mean_circ: 0.912101
Ran for 212550 frames Cell Events: 7108 mean_circ: 0.912171
Ran for 213050 frames Cell Events: 7134 mean_circ: 0.912175
Ran for 213550 frames Cell Events: 7175 mean_circ: 0.91226
Ran for 214050 frames Cell Events: 7205 mean_circ: 0.912354
Ran for 214550 frames Cell Events: 7218 mean_circ: 0.912333
Ran for 215050 frames Cell Events: 7240 mean_circ: 0.912384
Ran for 215550 frames Cell Events: 7247 mean_circ: 0.912411
Ran for 216050 frames Cell Events: 7259 mean_circ: 0.912299
Ran for 216550 frames Cell Events: 7270 mean_circ: 0.912303
Ran for 217050 frames Cell Events: 7288 mean_circ: 0.912293
Ran for 217550 frames Cell Events: 7306 mean_circ: 0.912302
Ran for 218050 frames Cell Events: 7313 mean_circ: 0.912305
Ran for 218550 frames Cell Events: 7324 mean_circ: 0.912322
Ran for 219050 frames Cell Events: 7340 mean_circ: 0.912341
Ran for 219550 frames Cell Events: 7357 mean_circ: 0.912361
Ran for 220050 frames Cell Events: 7377 mean_circ: 0.912422
Ran for 221050 frames Cell Events: 7411 mean_circ: 0.912429
Ran for 221550 frames Cell Events: 7420 mean_circ: 0.912466
Ran for 222050 frames Cell Events: 7431 mean_circ: 0.912467
Ran for 222550 frames Cell Events: 7448 mean_circ: 0.912469
Ran for 223050 frames Cell Events: 7460 mean_circ: 0.912456
Ran for 223550 frames Cell Events: 7484 mean_circ: 0.912342
Ran for 224550 frames Cell Events: 7527 mean_circ: 0.912306
Ran for 225050 frames Cell Events: 7551 mean_circ: 0.912237
Ran for 226550 frames Cell Events: 7593 mean_circ: 0.912161
Ran for 227550 frames Cell Events: 7629 mean_circ: 0.912217
Ran for 228050 frames Cell Events: 7648 mean_circ: 0.912245
Ran for 228550 frames Cell Events: 7665 mean_circ: 0.912248
Ran for 229050 frames Cell Events: 7678 mean_circ: 0.912236
Ran for 229550 frames Cell Events: 7695 mean_circ: 0.91221
Ran for 230050 frames Cell Events: 7708 mean_circ: 0.912245
Ran for 231550 frames Cell Events: 7760 mean_circ: 0.9123
Ran for 232050 frames Cell Events: 7776 mean_circ: 0.912302
Ran for 232550 frames Cell Events: 7792 mean_circ: 0.912336
Ran for 233050 frames Cell Events: 7814 mean_circ: 0.912372
Ran for 233550 frames Cell Events: 7822 mean_circ: 0.912381
Ran for 234550 frames Cell Events: 7862 mean_circ: 0.912373
Ran for 235050 frames Cell Events: 7884 mean_circ: 0.912366
Ran for 235550 frames Cell Events: 7900 mean_circ: 0.912391
Ran for 236050 frames Cell Events: 7920 mean_circ: 0.912355
Ran for 236550 frames Cell Events: 7943 mean_circ: 0.912344
Ran for 237550 frames Cell Events: 7983 mean_circ: 0.912304
Ran for 239050 frames Cell Events: 8063 mean_circ: 0.912353
Ran for 239550 frames Cell Events: 8081 mean_circ: 0.912417
Ran for 240550 frames Cell Events: 8109 mean_circ: 0.912371
Ran for 241050 frames Cell Events: 8122 mean_circ: 0.912317
Ran for 241550 frames Cell Events: 8140 mean_circ: 0.912236
Ran for 242050 frames Cell Events: 8165 mean_circ: 0.912086
Ran for 242550 frames Cell Events: 8177 mean_circ: 0.912078
Ran for 243550 frames Cell Events: 8207 mean_circ: 0.912027
Ran for 244050 frames Cell Events: 8221 mean_circ: 0.912084
Ran for 244550 frames Cell Events: 8243 mean_circ: 0.912104
Ran for 245050 frames Cell Events: 8259 mean_circ: 0.912063
Ran for 245550 frames Cell Events: 8276 mean_circ: 0.912022
Ran for 246550 frames Cell Events: 8304 mean_circ: 0.911891
Ran for 247050 frames Cell Events: 8326 mean_circ: 0.911877
Ran for 248550 frames Cell Events: 8395 mean_circ: 0.911813
Ran for 249050 frames Cell Events: 8410 mean_circ: 0.911711
Ran for 249550 frames Cell Events: 8422 mean_circ: 0.911719
Ran for 250550 frames Cell Events: 8460 mean_circ: 0.911699
Ran for 251050 frames Cell Events: 8471 mean_circ: 0.911714
Ran for 251550 frames Cell Events: 8484 mean_circ: 0.91168
Ran for 252050 frames Cell Events: 8503 mean_circ: 0.911636
Ran for 253050 frames Cell Events: 8544 mean_circ: 0.911677
Ran for 254050 frames Cell Events: 8592 mean_circ: 0.911599
Ran for 254550 frames Cell Events: 8605 mean_circ: 0.911585
Ran for 255050 frames Cell Events: 8618 mean_circ: 0.911619
Ran for 255550 frames Cell Events: 8641 mean_circ: 0.911641
Ran for 256050 frames Cell Events: 8656 mean_circ: 0.911579
Ran for 256550 frames Cell Events: 8674 mean_circ: 0.911587
Ran for 257050 frames Cell Events: 8690 mean_circ: 0.911645
Ran for 257550 frames Cell Events: 8714 mean_circ: 0.911614
Ran for 258550 frames Cell Events: 8764 mean_circ: 0.911613
Ran for 259050 frames Cell Events: 8780 mean_circ: 0.911585
Ran for 259550 frames Cell Events: 8806 mean_circ: 0.911613
Ran for 260050 frames Cell Events: 8820 mean_circ: 0.911613
Ran for 260550 frames Cell Events: 8829 mean_circ: 0.91158
Ran for 262050 frames Cell Events: 8879 mean_circ: 0.911591
Ran for 262550 frames Cell Events: 8896 mean_circ: 0.911572
Ran for 263050 frames Cell Events: 8924 mean_circ: 0.911453
Ran for 263550 frames Cell Events: 8939 mean_circ: 0.911426
Ran for 265050 frames Cell Events: 9010 mean_circ: 0.911415
Ran for 266050 frames Cell Events: 9055 mean_circ: 0.911443
Ran for 267050 frames Cell Events: 9098 mean_circ: 0.911404
Ran for 267550 frames Cell Events: 9113 mean_circ: 0.911437
Ran for 268550 frames Cell Events: 9152 mean_circ: 0.911415
Ran for 270050 frames Cell Events: 9205 mean_circ: 0.911509
Ran for 270550 frames Cell Events: 9230 mean_circ: 0.911487
Ran for 272050 frames Cell Events: 9291 mean_circ: 0.911509
Ran for 272550 frames Cell Events: 9316 mean_circ: 0.91152
Ran for 274550 frames Cell Events: 9381 mean_circ: 0.911522
Ran for 275050 frames Cell Events: 9410 mean_circ: 0.911547
Ran for 275550 frames Cell Events: 9432 mean_circ: 0.911554
Ran for 277050 frames Cell Events: 9494 mean_circ: 0.9116
Ran for 278050 frames Cell Events: 9551 mean_circ: 0.911663
Ran for 279550 frames Cell Events: 9626 mean_circ: 0.911605
Ran for 281050 frames Cell Events: 9717 mean_circ: 0.911695
Ran for 282050 frames Cell Events: 9750 mean_circ: 0.911649
Ran for 283050 frames Cell Events: 9777 mean_circ: 0.911632
Ran for 283550 frames Cell Events: 9797 mean_circ: 0.911662
Ran for 284050 frames Cell Events: 9812 mean_circ: 0.911664
Ran for 285050 frames Cell Events: 9845 mean_circ: 0.911672
Ran for 285550 frames Cell Events: 9864 mean_circ: 0.911661
Ran for 286550 frames Cell Events: 9891 mean_circ: 0.911598
Ran for 287550 frames Cell Events: 9930 mean_circ: 0.911593
Ran for 288050 frames Cell Events: 9948 mean_circ: 0.911597
Ran for 288550 frames Cell Events: 9972 mean_circ: 0.911558
End this measurment.
because stop condition (time/nr of cells) was met
Stopping time: 7.21152e+008
****************************************
Measurement finished
Mean Circularitiy: 0.9115
Mean Area: 693.845
Mean FL-1 intensity: 3059.88
Mean FL-2 intensity: 4721.05
Mean FL-3 intensity: 0
frames processed: 286523
Total Time: 144798ms
Number of Runs (new bg img) 0
Frames collected: 289454
Skipped frames: 83822
Rescued Frames: 2867621
Samples DAQ: 72363500
Samples written: 144726736
Samples per Channel: 72363368
FPS: 1999.02
Samples per second: 499755
Expected samples/s: 500000
Events: 10000
Events per second: 69.0619
jumped back (PMT): 14
#Frames read, frequency
# 0 frames :390141
# 1 frames :168059
# 2 frames :6208
# 3 frames :1921
# 4 frames :894
# 5 frames :278
# 6 frames :3900
# 7 frames :2439
# 8 frames :1668
# 9 frames :790
# 10 frames :481
# 11 frames :480
# 12 frames :457
# 13 frames :262
# 14 frames :232
# 15 frames :145
# 16 frames :91
# 17 frames :107
# 18 frames :69
# 19 frames :43
# 20 frames :30
# 21 frames :30
# 22 frames :21
# 23 frames :18
# 24 frames :16
# 25 frames :12
# 26 frames :10
# 27 frames :4
# 28 frames :9
# 29 frames :2
# 30 frames :3
# 31 frames :2
# 32 frames :6
# 33 frames :5
# 34 frames :3
# 35 frames :3
# 37 frames :3
# 41 frames :1
# 44 frames :4
# 45 frames :1
# 49 frames :2
# 54 frames :1
# 56 frames :2
# 64 frames :1
# 78 frames :1
M1_para.ini
[General]
Measurement Number = 1
Flow Rate [ul/s] = 0.06
Region = "Channel"
Channel width = 20
Current LED = 100
[Image]
Setup = Cell_Flow_2 + Fluor
Bin Ops = 5
Blur = 0
Trig Thresh = 50
t1 = -256
t2 = -6
Pix Size = 0.34
Cell Min = 5
Cell Max = 50
Thresh = 6
Diff_Method = 1
Margin = 0
#[FLUOR]
#fRT-DC V1.06170206
#Samplerate = 500000
#Bitdepthraw = 16
#Format = int16
#ADCmin = -1
#ADCmax = 1
#FL-Channels = 2
Laser Power 488 [mW] = 10
Laser Power 561 [mW] = 35
Laser Power 640 [mW] = 0
Ambient Temp. [C] = 25.1087
parameters.txt
#fRT-DC Configuration file
# You may change the values here before a measurement.
debug 0
hull 1
x_size 256
y_size 96
x_pos 504
y_pos 464
pix_size 0.34
cell_min 5
cell_max_x 50
cell_max_y 50
cell_aspect_min 0
cell_aspect_max 10
threshold1 -256
threshold2 -6
trig_threshold 50
MARGIN 0
write_videos 0
write_phot_det 0
show_video 1
write_events 1
fps 2000
samplesperframe 200
Vmin -1
Vmax 1
invertCh1 1
invertCh2 1
invertCh3 1
invertChX 1
samplerate 500000
bg_img 100
channel_width 20
current_led 100
pulse_led 2
binary_ops 5
blur 0
median_pmt 5
software_binops 1
flowctrl 0
flowwait 60
numberofchannels 2
firstchannel 4
secondchannel 5
thirdchannel -6
laser488 10
laser561 35
laser640 0
peakcountthreshold 1000
peakDipRatio 0.8
offsetFL1 0
offsetFL2 0
offsetFL3 0
rollingAverage 100
stopCell 10000
stopTime 0
minFL1 400
minFL2 668
minFL3 -32768
maxFL1 32767
maxFL2 32767
maxFL3 32767
setTimingAutomatic 1
plotWidth 0
getBrightness 0
intellPeak 0