Click on the log titles below to expand the log entries present in this DC resource.
dclab-export_2024-07-10_12.17.43
{"dclab version": [0, 60, 3], "kwargs": {"features": ["area_cvx", "area_msd", "circ", "contour", "fl1_area", "fl1_dist", "fl1_max", "fl1_npeaks", "fl1_pos", "fl1_width", "fl2_area", "fl2_dist", "fl2_max", "fl2_npeaks", "fl2_pos", "fl2_width", "frame", "image", "inert_ratio_cvx", "inert_ratio_raw", "mask", "nevents", "pos_x", "pos_y", "size_x", "size_y", "trace"], "filtered": true, "logs": false, "tables": false, "basins": false, "meta_prefix": "src_", "skip_checks": false}}
dclab-tdms2rtdc
{
"ancillary features": [
"mask"
],
"files": [
{
"index": 1,
"md5-5M": "c500b09b01354b1e83fca11972d3fadd",
"name": "M1_20170603_1748_dsRNA_C7_faster.tdms"
}
],
"libraries": {
"dclab": "0.60.3",
"h5py": "3.11.0",
"imageio": "2.34.2",
"nptdms": "1.8.0",
"numpy": "1.26.4"
},
"python": {
"build": "tags/v3.11.1:a7a450f, Dec 6 2022 19:58:39",
"implementation": "CPython",
"version": "3.11.1"
},
"system": {
"info": "Windows-10-10.0.19045-SP0",
"machine": "AMD64",
"name": "Windows",
"release": "10",
"version": "10.0.19045"
},
"utc": {
"date": "2024-07-10",
"time": "10:17:45"
}
}
dclab-tdms2rtdc-warnings
LimitingExportSizeWarning
in dclab.rtdc_dataset.export line 305:
Not all features have the same length! Limiting output event count to 822 (max 823) in '822'.
FG_Config.mcf
[Kamerasektion]
ConfigFileVersion=2.0;
Hersteller='Generic-CameraLink';
Typ='vas';
HapName='C:/Lib/SiliconSoftware/Runtime5.4.1/Hardware Applets/mE4VD4-CL/PR_BG_subtr_141204_ext_trig_noerode.hap';
Version='1.5';
LoadAppletId=0;
AktivePort=0;
[ID0]
FG_WIDTH=256;
FG_HEIGHT=96;
FG_TIMEOUT=1000000;
FG_FORMAT=3;
FG_PORT=0;
FG_GLOBAL_ACCESS=0;
Device1_Process0_UpperBits_BitOffset=4;
Device1_Process0_module9_SyncMode=0;
Device1_Process0_Camera_DvalMode=1;
Device1_Process0_Camera_FullMode=0;
Device1_Process0_DMA_PixelsPerLine=0;
Device1_Process0_DMA_BytesPerLine=0;
Device1_Process0_LowerBits_BitOffset=0;
Device1_Process0_Buffer1_XOffset=0;
Device1_Process0_Buffer1_XLength=256;
Device1_Process0_Buffer1_YOffset=0;
Device1_Process0_Buffer1_YLength=96;
Device1_Process0_Buffer1_FillLevel=75;
Device1_Process0_Buffer1_Overflow=0;
Device1_Process0_Buffer1_InfiniteSource=0;
Device1_Process0_Buffer0_XOffset=0;
Device1_Process0_Buffer0_XLength=256;
Device1_Process0_Buffer0_YOffset=0;
Device1_Process0_Buffer0_YLength=96;
Device1_Process0_Buffer0_FillLevel=75;
Device1_Process0_Buffer0_Overflow=0;
Device1_Process0_Buffer0_InfiniteSource=0;
Device1_Process0_module12_BufferWidth=400;
Device1_Process0_module12_BufferHeight=96;
Device1_Process0_module12_XOffset=0;
Device1_Process0_module12_XLength=256;
Device1_Process0_module12_YOffset=0;
Device1_Process0_module12_YLength=96;
Device1_Process0_module12_UpdateROI=1;
Device1_Process0_module12_CoefficientFile 0='coefficients_0.tif';
Device1_Process0_module12_LoadCoefficients=1;
Device1_Process0_module13_SyncMode=0;
Device1_Process0_module16_from=18446744073709551360;
Device1_Process0_module16_to=18446744073709551610;
Device1_Process0_module17_Value=0;
Device1_Process0_module20_PixelsPerLine=0;
Device1_Process0_module20_BytesPerLine=0;
Device1_Process0_module21_Number=0;
Device1_Process0_module26_ScaleFactorMaxBits=8;
Device1_Process0_module26_ScaleFactor=255;
Device1_Process0_module28_TriggerMode=2;
Device1_Process0_module28_ExsyncEnable=1;
Device1_Process0_module28_FlashEnable=1;
Device1_Process0_module28_SoftwareTrgPulse=1;
Device1_Process0_module28_SoftwareTrgIsBusy=0;
Device1_Process0_module28_ImgTrgInSource=0;
Device1_Process0_module28_ImgTrgInPolarity=0;
Device1_Process0_module28_ImgTrgDownscale=1;
Device1_Process0_module28_Accuracy=2;
Device1_Process0_module28_ExsyncFramesPerSec=2000;
Device1_Process0_module28_ExsyncExposure=20;
Device1_Process0_module28_ExsyncDelay=0;
Device1_Process0_module28_ExsyncPolarity=0;
Device1_Process0_module28_FlashDelay=0;
Device1_Process0_module28_SoftwareTrgDeadTime=10000;
Device1_Process0_module28_FlashPolarity=1;
Device1_Process0_module28_CC1output=0;
Device1_Process0_module28_CC2output=8;
Device1_Process0_module28_CC3output=8;
Device1_Process0_module28_CC4output=8;
Device1_Process0_module28_DebouncingMaxTime=65.52;
Device1_Process0_module28_DebouncingTime=0.112;
[ID1]
FG_WIDTH=256;
FG_HEIGHT=96;
FG_TIMEOUT=1000000;
FG_FORMAT=3;
M1_camera.ini
[Framerate]
Shutter Time = 20
Frame Rate = 2000
Tap Mode = 8x8 Bit
Tap Code = 6
[ROI]
x-pos = 504
y-pos = 472
width = 256
height = 96
M1_log.ini
[EVENT LOG] fRT-DC V1.06170206
Reset global variables..
Circular Buffer Size is: 1000000
Ambient Temperature [C] = 24.4986
Start pulse train for BG Aquisition..
Now refreshing the background image stored in the framegrabber
STATE: 3
Starting time: 1.67554e+009
Use analog input: pci/ai4,pci/ai5
Samplerate per channel: 500000
Buffersize in byte: 1000000
Rising Edge, Continuous Sampling
N_callback: 125
Callbacks per frame: 2
Callback registered
Configure tasks for online measurement..
Timing: start directly
Freq: 2000
Duty cycle: 0.5
Reset global variables: i0, i1, samplesThisRun
Start the Fragegrabber ..
Start the NI-DAQ Card..
Stop after time: 0
Stop after nr. of cells: 10000
Ran for 550 frames Cell Events: 16 mean_circ: 0.94281
Ran for 1050 frames Cell Events: 36 mean_circ: 0.942677
Ran for 2050 frames Cell Events: 87 mean_circ: 0.94139
Ran for 3050 frames Cell Events: 126 mean_circ: 0.943851
Ran for 4550 frames Cell Events: 171 mean_circ: 0.915669
Ran for 5050 frames Cell Events: 190 mean_circ: 0.918288
Ran for 5550 frames Cell Events: 217 mean_circ: 0.919159
Ran for 6050 frames Cell Events: 232 mean_circ: 0.920683
Ran for 6550 frames Cell Events: 254 mean_circ: 0.921902
Ran for 7050 frames Cell Events: 286 mean_circ: 0.923204
Ran for 8050 frames Cell Events: 342 mean_circ: 0.926899
Ran for 8550 frames Cell Events: 366 mean_circ: 0.92785
Ran for 9050 frames Cell Events: 384 mean_circ: 0.928265
Ran for 10050 frames Cell Events: 442 mean_circ: 0.929382
Ran for 10550 frames Cell Events: 453 mean_circ: 0.929328
Ran for 11550 frames Cell Events: 498 mean_circ: 0.930405
Ran for 12050 frames Cell Events: 521 mean_circ: 0.930348
Ran for 13050 frames Cell Events: 570 mean_circ: 0.931436
Ran for 13550 frames Cell Events: 598 mean_circ: 0.931927
Ran for 14050 frames Cell Events: 617 mean_circ: 0.932238
Ran for 14550 frames Cell Events: 631 mean_circ: 0.932398
Ran for 15050 frames Cell Events: 657 mean_circ: 0.932902
Ran for 15550 frames Cell Events: 676 mean_circ: 0.933106
Ran for 16050 frames Cell Events: 696 mean_circ: 0.933175
Ran for 17050 frames Cell Events: 736 mean_circ: 0.932938
Ran for 17550 frames Cell Events: 755 mean_circ: 0.933285
Ran for 18550 frames Cell Events: 795 mean_circ: 0.933745
Ran for 19050 frames Cell Events: 813 mean_circ: 0.933891
End this measurment..
Stopping time: 1.67555e+009
****************************************
Measurement finished
Mean Circularitiy: 0.933905
Mean Area: 708.707
Mean FL-1 intensity: 2937.94
Mean FL-2 intensity: 3899.12
Mean FL-3 intensity: 0
frames processed: 18560
Total Time: 9771.62ms
Number of Runs (new bg img) 0
Frames collected: 19425
Skipped frames: 105081
Rescued Frames: 2916082
Samples DAQ: 4856291
Samples written: 9712496
Samples per Channel: 4856248
FPS: 1987.9
Samples per second: 496975
Expected samples/s: 500000
Events: 823
Events per second: 84.2235
jumped back (PMT): 4
#Frames read, frequency
# 0 frames :29097
# 1 frames :8206
# 2 frames :366
# 3 frames :142
# 4 frames :72
# 5 frames :39
# 6 frames :187
# 7 frames :115
# 8 frames :85
# 9 frames :64
# 10 frames :86
# 11 frames :57
# 12 frames :42
# 13 frames :19
# 14 frames :28
# 15 frames :18
# 16 frames :25
# 17 frames :18
# 18 frames :13
# 19 frames :8
# 20 frames :5
# 21 frames :5
# 22 frames :5
# 23 frames :3
# 24 frames :5
# 25 frames :2
# 26 frames :5
# 27 frames :3
# 28 frames :2
# 29 frames :1
# 30 frames :6
# 31 frames :3
# 32 frames :1
# 34 frames :1
# 35 frames :2
# 36 frames :1
# 37 frames :1
# 39 frames :1
# 40 frames :2
# 41 frames :1
# 46 frames :1
# 52 frames :2
# 55 frames :1
# 56 frames :1
# 63 frames :1
# 68 frames :1
# 70 frames :1
# 71 frames :1
# 74 frames :1
# 87 frames :1
M1_para.ini
[General]
Measurement Number = 1
Flow Rate [ul/s] = 0.06
Region = "Channel"
Channel width = 20
Current LED = 100
[Image]
Setup = Cell_Flow_2 + Fluor
Bin Ops = 5
Blur = 0
Trig Thresh = 50
t1 = -256
t2 = -6
Pix Size = 0.34
Cell Min = 5
Cell Max = 50
Thresh = 6
Diff_Method = 1
Margin = 0
#[FLUOR]
#fRT-DC V1.06170206
#Samplerate = 500000
#Bitdepthraw = 16
#Format = int16
#ADCmin = -1
#ADCmax = 1
#FL-Channels = 2
Laser Power 488 [mW] = 10
Laser Power 561 [mW] = 35
Laser Power 640 [mW] = 0
Ambient Temp. [C] = 24.4986
parameters.txt
#fRT-DC Configuration file
# You may change the values here before a measurement.
debug 0
hull 1
x_size 256
y_size 96
x_pos 504
y_pos 464
pix_size 0.34
cell_min 5
cell_max_x 50
cell_max_y 50
cell_aspect_min 0
cell_aspect_max 10
threshold1 -256
threshold2 -6
trig_threshold 50
MARGIN 0
write_videos 0
write_phot_det 0
show_video 1
write_events 1
fps 2000
samplesperframe 200
Vmin -1
Vmax 1
invertCh1 1
invertCh2 1
invertCh3 1
invertChX 1
samplerate 500000
bg_img 100
channel_width 20
current_led 100
pulse_led 2
binary_ops 5
blur 0
median_pmt 5
software_binops 1
flowctrl 0
flowwait 60
numberofchannels 2
firstchannel 4
secondchannel 5
thirdchannel -6
laser488 10
laser561 35
laser640 0
peakcountthreshold 1000
peakDipRatio 0.8
offsetFL1 0
offsetFL2 0
offsetFL3 0
rollingAverage 100
stopCell 10000
stopTime 0
minFL1 400
minFL2 668
minFL3 -32768
maxFL1 32767
maxFL2 32767
maxFL3 32767
setTimingAutomatic 1
plotWidth 0
getBrightness 0
intellPeak 0