Click on the log titles below to expand the log entries present in this DC resource.
dclab-export_2024-07-10_13.05.44
{"dclab version": [0, 60, 3], "kwargs": {"features": ["area_cvx", "area_msd", "circ", "contour", "fl1_area", "fl1_dist", "fl1_max", "fl1_npeaks", "fl1_pos", "fl1_width", "fl2_area", "fl2_dist", "fl2_max", "fl2_npeaks", "fl2_pos", "fl2_width", "frame", "image", "inert_ratio_cvx", "inert_ratio_raw", "mask", "nevents", "pos_x", "pos_y", "size_x", "size_y", "trace"], "filtered": true, "logs": false, "tables": false, "basins": false, "meta_prefix": "src_", "skip_checks": false}}
dclab-tdms2rtdc
{
"ancillary features": [
"mask"
],
"files": [
{
"index": 1,
"md5-5M": "06d66132823612ea62089399c0577350",
"name": "M1_20170605_1352_dsRNA_I1_faster.tdms"
}
],
"libraries": {
"dclab": "0.60.3",
"h5py": "3.11.0",
"imageio": "2.34.2",
"nptdms": "1.8.0",
"numpy": "1.26.4"
},
"python": {
"build": "tags/v3.11.1:a7a450f, Dec 6 2022 19:58:39",
"implementation": "CPython",
"version": "3.11.1"
},
"system": {
"info": "Windows-10-10.0.19045-SP0",
"machine": "AMD64",
"name": "Windows",
"release": "10",
"version": "10.0.19045"
},
"utc": {
"date": "2024-07-10",
"time": "11:05:46"
}
}
dclab-tdms2rtdc-warnings
LimitingExportSizeWarning
in dclab.rtdc_dataset.export line 305:
Not all features have the same length! Limiting output event count to 952 (max 953) in '952'.
FG_Config.mcf
[Kamerasektion]
ConfigFileVersion=2.0;
Hersteller='Generic-CameraLink';
Typ='vas';
HapName='C:/Lib/SiliconSoftware/Runtime5.4.1/Hardware Applets/mE4VD4-CL/PR_BG_subtr_141204_ext_trig_noerode.hap';
Version='1.5';
LoadAppletId=0;
AktivePort=0;
[ID0]
FG_WIDTH=256;
FG_HEIGHT=96;
FG_TIMEOUT=1000000;
FG_FORMAT=3;
FG_PORT=0;
FG_GLOBAL_ACCESS=0;
Device1_Process0_UpperBits_BitOffset=4;
Device1_Process0_module9_SyncMode=0;
Device1_Process0_Camera_DvalMode=1;
Device1_Process0_Camera_FullMode=0;
Device1_Process0_DMA_PixelsPerLine=0;
Device1_Process0_DMA_BytesPerLine=0;
Device1_Process0_LowerBits_BitOffset=0;
Device1_Process0_Buffer1_XOffset=0;
Device1_Process0_Buffer1_XLength=256;
Device1_Process0_Buffer1_YOffset=0;
Device1_Process0_Buffer1_YLength=96;
Device1_Process0_Buffer1_FillLevel=75;
Device1_Process0_Buffer1_Overflow=0;
Device1_Process0_Buffer1_InfiniteSource=0;
Device1_Process0_Buffer0_XOffset=0;
Device1_Process0_Buffer0_XLength=256;
Device1_Process0_Buffer0_YOffset=0;
Device1_Process0_Buffer0_YLength=96;
Device1_Process0_Buffer0_FillLevel=75;
Device1_Process0_Buffer0_Overflow=0;
Device1_Process0_Buffer0_InfiniteSource=0;
Device1_Process0_module12_BufferWidth=400;
Device1_Process0_module12_BufferHeight=96;
Device1_Process0_module12_XOffset=0;
Device1_Process0_module12_XLength=256;
Device1_Process0_module12_YOffset=0;
Device1_Process0_module12_YLength=96;
Device1_Process0_module12_UpdateROI=1;
Device1_Process0_module12_CoefficientFile 0='coefficients_0.tif';
Device1_Process0_module12_LoadCoefficients=1;
Device1_Process0_module13_SyncMode=0;
Device1_Process0_module16_from=18446744073709551360;
Device1_Process0_module16_to=18446744073709551610;
Device1_Process0_module17_Value=0;
Device1_Process0_module20_PixelsPerLine=0;
Device1_Process0_module20_BytesPerLine=0;
Device1_Process0_module21_Number=0;
Device1_Process0_module26_ScaleFactorMaxBits=8;
Device1_Process0_module26_ScaleFactor=255;
Device1_Process0_module28_TriggerMode=2;
Device1_Process0_module28_ExsyncEnable=1;
Device1_Process0_module28_FlashEnable=1;
Device1_Process0_module28_SoftwareTrgPulse=1;
Device1_Process0_module28_SoftwareTrgIsBusy=0;
Device1_Process0_module28_ImgTrgInSource=0;
Device1_Process0_module28_ImgTrgInPolarity=0;
Device1_Process0_module28_ImgTrgDownscale=1;
Device1_Process0_module28_Accuracy=2;
Device1_Process0_module28_ExsyncFramesPerSec=2000;
Device1_Process0_module28_ExsyncExposure=20;
Device1_Process0_module28_ExsyncDelay=0;
Device1_Process0_module28_ExsyncPolarity=0;
Device1_Process0_module28_FlashDelay=0;
Device1_Process0_module28_SoftwareTrgDeadTime=10000;
Device1_Process0_module28_FlashPolarity=1;
Device1_Process0_module28_CC1output=0;
Device1_Process0_module28_CC2output=8;
Device1_Process0_module28_CC3output=8;
Device1_Process0_module28_CC4output=8;
Device1_Process0_module28_DebouncingMaxTime=65.52;
Device1_Process0_module28_DebouncingTime=0.112;
[ID1]
FG_WIDTH=256;
FG_HEIGHT=96;
FG_TIMEOUT=1000000;
FG_FORMAT=3;
M1_camera.ini
[Framerate]
Shutter Time = 20
Frame Rate = 2000
Tap Mode = 8x8 Bit
Tap Code = 6
[ROI]
x-pos = 504
y-pos = 472
width = 256
height = 96
M1_log.ini
[EVENT LOG] fRT-DC V1.06170206
Reset global variables..
Circular Buffer Size is: 1000000
Ambient Temperature [C] = 24.4968
Start pulse train for BG Aquisition..
Now refreshing the background image stored in the framegrabber
STATE: 3
Starting time: 1.83415e+009
Use analog input: pci/ai4,pci/ai5
Samplerate per channel: 500000
Buffersize in byte: 1000000
Rising Edge, Continuous Sampling
N_callback: 125
Callbacks per frame: 2
Callback registered
Configure tasks for online measurement..
Timing: start directly
Freq: 2000
Duty cycle: 0.5
Reset global variables: i0, i1, samplesThisRun
Start the Fragegrabber ..
Start the NI-DAQ Card..
Stop after time: 0
Stop after nr. of cells: 10000
Ran for 1550 frames Cell Events: 54 mean_circ: 0.918727
Ran for 2050 frames Cell Events: 69 mean_circ: 0.914475
Ran for 3050 frames Cell Events: 111 mean_circ: 0.910139
Ran for 3550 frames Cell Events: 125 mean_circ: 0.912418
Ran for 4050 frames Cell Events: 145 mean_circ: 0.914784
Ran for 4550 frames Cell Events: 172 mean_circ: 0.914736
Ran for 5550 frames Cell Events: 214 mean_circ: 0.914679
Ran for 6050 frames Cell Events: 225 mean_circ: 0.913
Ran for 8050 frames Cell Events: 301 mean_circ: 0.913113
Ran for 8550 frames Cell Events: 312 mean_circ: 0.911856
Ran for 10050 frames Cell Events: 377 mean_circ: 0.910741
Ran for 10550 frames Cell Events: 393 mean_circ: 0.911592
Ran for 11050 frames Cell Events: 412 mean_circ: 0.911877
Ran for 14050 frames Cell Events: 525 mean_circ: 0.912468
Ran for 15050 frames Cell Events: 568 mean_circ: 0.911806
Ran for 17050 frames Cell Events: 642 mean_circ: 0.912746
Ran for 17550 frames Cell Events: 663 mean_circ: 0.912909
Ran for 18050 frames Cell Events: 682 mean_circ: 0.911997
Ran for 18550 frames Cell Events: 705 mean_circ: 0.911686
Ran for 19050 frames Cell Events: 722 mean_circ: 0.911767
Ran for 19550 frames Cell Events: 735 mean_circ: 0.911504
Ran for 20550 frames Cell Events: 776 mean_circ: 0.911851
Ran for 21050 frames Cell Events: 791 mean_circ: 0.911899
Ran for 21550 frames Cell Events: 816 mean_circ: 0.911833
Ran for 22050 frames Cell Events: 843 mean_circ: 0.911672
Ran for 24050 frames Cell Events: 926 mean_circ: 0.911085
End this measurment..
Stopping time: 1.83416e+009
****************************************
Measurement finished
Mean Circularitiy: 0.91078
Mean Area: 621.173
Mean FL-1 intensity: 3333.05
Mean FL-2 intensity: 4250.84
Mean FL-3 intensity: 0
frames processed: 24530
Total Time: 12381.8ms
Number of Runs (new bg img) 0
Frames collected: 24638
Skipped frames: 2364
Rescued Frames: 288549
Samples DAQ: 6161098
Samples written: 12318834
Samples per Channel: 6159417
FPS: 1989.85
Samples per second: 497455
Expected samples/s: 500000
Events: 953
Events per second: 76.9675
jumped back (PMT): 3
#Frames read, frequency
# 0 frames :35538
# 1 frames :11672
# 2 frames :499
# 3 frames :164
# 4 frames :101
# 5 frames :52
# 6 frames :200
# 7 frames :185
# 8 frames :117
# 9 frames :112
# 10 frames :136
# 11 frames :56
# 12 frames :40
# 13 frames :23
# 14 frames :21
# 15 frames :22
# 16 frames :16
# 17 frames :14
# 18 frames :20
# 19 frames :12
# 20 frames :5
# 21 frames :10
# 22 frames :6
# 23 frames :3
# 24 frames :6
# 25 frames :2
# 26 frames :5
# 27 frames :4
# 28 frames :4
# 29 frames :3
# 30 frames :2
# 31 frames :2
# 32 frames :2
# 33 frames :3
# 34 frames :1
# 35 frames :2
# 39 frames :1
# 43 frames :1
# 44 frames :1
# 48 frames :1
# 49 frames :1
# 50 frames :1
# 53 frames :1
# 55 frames :1
M1_para.ini
[General]
Measurement Number = 1
Flow Rate [ul/s] = 0.06
Region = "Channel"
Channel width = 20
Current LED = 100
[Image]
Setup = Cell_Flow_2 + Fluor
Bin Ops = 5
Blur = 0
Trig Thresh = 50
t1 = -256
t2 = -6
Pix Size = 0.34
Cell Min = 5
Cell Max = 50
Thresh = 6
Diff_Method = 1
Margin = 0
#[FLUOR]
#fRT-DC V1.06170206
#Samplerate = 500000
#Bitdepthraw = 16
#Format = int16
#ADCmin = -1
#ADCmax = 1
#FL-Channels = 2
Laser Power 488 [mW] = 10
Laser Power 561 [mW] = 35
Laser Power 640 [mW] = 0
Ambient Temp. [C] = 24.4968
parameters.txt
#fRT-DC Configuration file
# You may change the values here before a measurement.
debug 0
hull 1
x_size 256
y_size 96
x_pos 504
y_pos 464
pix_size 0.34
cell_min 5
cell_max_x 50
cell_max_y 50
cell_aspect_min 0
cell_aspect_max 10
threshold1 -256
threshold2 -6
trig_threshold 50
MARGIN 0
write_videos 0
write_phot_det 0
show_video 1
write_events 1
fps 2000
samplesperframe 200
Vmin -1
Vmax 1
invertCh1 1
invertCh2 1
invertCh3 1
invertChX 1
samplerate 500000
bg_img 100
channel_width 20
current_led 100
pulse_led 2
binary_ops 5
blur 0
median_pmt 5
software_binops 1
flowctrl 0
flowwait 60
numberofchannels 2
firstchannel 4
secondchannel 5
thirdchannel -6
laser488 10
laser561 35
laser640 0
peakcountthreshold 1000
peakDipRatio 0.8
offsetFL1 0
offsetFL2 0
offsetFL3 0
rollingAverage 100
stopCell 10000
stopTime 0
minFL1 400
minFL2 668
minFL3 -32768
maxFL1 32767
maxFL2 32767
maxFL3 32767
setTimingAutomatic 1
plotWidth 0
getBrightness 0
intellPeak 0