Click on the log titles below to expand the log entries present in this DC resource.
cfg-#1
[experiment]
date = 2020-12-10
event count = 2954
run index = 1
sample = 201210_20_TG_RhoA_Colon_CD45_Epcam
time = 13:05:15
[fluorescence]
bit depth = 16
channel 1 name = 525/50
channel 3 name = 700/75
channel count = 2
channels installed = 3
laser 1 lambda = 488.000000000000
laser 1 power = 1.500000000000
laser 3 lambda = 640.000000000000
laser 3 power = 15.000000000000
laser count = 2
lasers installed = 3
sample rate = 1000000.000000000000
samples per event = 561
signal max = 1.000000000000
signal min = -1.000000000000
trace median = 7
[imaging]
flash device = LED (ZMD L1)
flash duration = 2.000000000000
frame rate = 1600.000000000000
pixel size = 0.337000012398
roi position x = 629.000000000000
roi position y = 490.000000000000
roi size x = 250
roi size y = 80
[online_contour]
bin area min = 10
bin kernel = 5
bin threshold = -6
image blur = 0
no absdiff = True
[online_filter]
area_ratio max = 1.049999952316
area_ratio min = 1.000000000000
area_ratio soft limit = True
area_um max = 1500.000000000000
area_um min = 10.000000000000
area_um soft limit = False
deform max = 0.200000002980
deform min = 0.000000000000
deform soft limit = True
size_x max = 80
size_x min = 1
size_x soft limit = False
size_y max = 80
size_y min = 1
size_y soft limit = False
[setup]
channel width = 20.000000000000
chip region = channel
flow rate = 0.059999998659
flow rate sample = 0.014999999665
flow rate sheath = 0.045000001788
identifier = ZMDD-AcC-04682c-208b19
medium = CellCarrierB
module composition = AcCellerator,FluorescenceModule
software version = 2.1.1.0
temperature = 23.600000381470
cfg-#2
[experiment]
date = 2020-12-10
event count = 2480
run index = 2
sample = 201210_20_TG_RhoA_Colon_CD45_Epcam
time = 13:22:28
[fluorescence]
bit depth = 16
channel 1 name = 525/50
channel 3 name = 700/75
channel count = 2
channels installed = 3
laser 1 lambda = 488.000000000000
laser 1 power = 1.500000000000
laser 3 lambda = 640.000000000000
laser 3 power = 15.000000000000
laser count = 2
lasers installed = 3
sample rate = 1000000.000000000000
samples per event = 561
signal max = 1.000000000000
signal min = -1.000000000000
trace median = 7
[imaging]
flash device = LED (ZMD L1)
flash duration = 2.000000000000
frame rate = 1600.000000000000
pixel size = 0.337000012398
roi position x = 629.000000000000
roi position y = 490.000000000000
roi size x = 250
roi size y = 80
[online_contour]
bin area min = 10
bin kernel = 5
bin threshold = -6
image blur = 0
no absdiff = True
[online_filter]
area_ratio max = 1.049999952316
area_ratio min = 1.000000000000
area_ratio soft limit = True
area_um max = 1500.000000000000
area_um min = 10.000000000000
area_um soft limit = False
deform max = 0.200000002980
deform min = 0.000000000000
deform soft limit = True
size_x max = 80
size_x min = 1
size_x soft limit = False
size_y max = 80
size_y min = 1
size_y soft limit = False
[setup]
channel width = 20.000000000000
chip region = channel
flow rate = 0.059999998659
flow rate sample = 0.014999999665
flow rate sheath = 0.045000001788
identifier = ZMDD-AcC-04682c-208b19
medium = CellCarrierB
module composition = AcCellerator,FluorescenceModule
software version = 2.1.1.0
temperature = 24.100000381470
cfg-#3
[experiment]
date = 2020-12-10
event count = 12233
run index = 3
sample = 201210_20_TG_RhoA_Colon_CD45_Epcam
time = 13:43:42
[fluorescence]
bit depth = 16
channel 1 name = 525/50
channel 3 name = 700/75
channel count = 2
channels installed = 3
laser 1 lambda = 488.000000000000
laser 1 power = 1.500000000000
laser 3 lambda = 640.000000000000
laser 3 power = 15.000000000000
laser count = 2
lasers installed = 3
sample rate = 1000000.000000000000
samples per event = 561
signal max = 1.000000000000
signal min = -1.000000000000
trace median = 7
[imaging]
flash device = LED (ZMD L1)
flash duration = 2.000000000000
frame rate = 1600.000000000000
pixel size = 0.337000012398
roi position x = 629.000000000000
roi position y = 490.000000000000
roi size x = 250
roi size y = 80
[online_contour]
bin area min = 10
bin kernel = 5
bin threshold = -6
image blur = 0
no absdiff = True
[online_filter]
area_ratio max = 1.049999952316
area_ratio min = 1.000000000000
area_ratio soft limit = True
area_um max = 1500.000000000000
area_um min = 10.000000000000
area_um soft limit = False
deform max = 0.200000002980
deform min = 0.000000000000
deform soft limit = True
size_x max = 80
size_x min = 1
size_x soft limit = False
size_y max = 80
size_y min = 1
size_y soft limit = False
[setup]
channel width = 20.000000000000
chip region = channel
flow rate = 0.059999998659
flow rate sample = 0.014999999665
flow rate sheath = 0.045000001788
identifier = ZMDD-AcC-04682c-208b19
medium = CellCarrierB
module composition = AcCellerator,FluorescenceModule
software version = 2.1.1.0
temperature = 24.600000381470
cfg-#4
[experiment]
date = 2020-12-10
event count = 7646
run index = 4
sample = 201210_20_TG_RhoA_Colon_CD45_Epcam
time = 14:11:31
[fluorescence]
bit depth = 16
channel 1 name = 525/50
channel 3 name = 700/75
channel count = 2
channels installed = 3
laser 1 lambda = 488.000000000000
laser 1 power = 1.500000000000
laser 3 lambda = 640.000000000000
laser 3 power = 15.000000000000
laser count = 2
lasers installed = 3
sample rate = 1000000.000000000000
samples per event = 561
signal max = 1.000000000000
signal min = -1.000000000000
trace median = 7
[imaging]
flash device = LED (ZMD L1)
flash duration = 2.000000000000
frame rate = 1600.000000000000
pixel size = 0.337000012398
roi position x = 629.000000000000
roi position y = 490.000000000000
roi size x = 250
roi size y = 80
[online_contour]
bin area min = 10
bin kernel = 5
bin threshold = -6
image blur = 0
no absdiff = True
[online_filter]
area_ratio max = 1.049999952316
area_ratio min = 1.000000000000
area_ratio soft limit = True
area_um max = 1500.000000000000
area_um min = 10.000000000000
area_um soft limit = False
deform max = 0.200000002980
deform min = 0.000000000000
deform soft limit = True
size_x max = 80
size_x min = 1
size_x soft limit = False
size_y max = 80
size_y min = 1
size_y soft limit = False
[setup]
channel width = 20.000000000000
chip region = channel
flow rate = 0.059999998659
flow rate sample = 0.014999999665
flow rate sheath = 0.045000001788
identifier = ZMDD-AcC-04682c-208b19
medium = CellCarrierB
module composition = AcCellerator,FluorescenceModule
software version = 2.1.1.0
temperature = 25.100000381470
dckit-history
[
{
"libraries": {
"dckit": "0.12.16",
"dclab": "0.38.2",
"h5py": "3.5.0",
"imageio": "2.10.3",
"nptdms": "1.4.0",
"numpy": "1.19.3"
},
"python": {
"build": "tags/v3.8.0:fa919fd, Oct 14 2019 19:37:50",
"implementation": "CPython",
"version": "3.8.0"
},
"system": {
"info": "Windows-10-10.0.18362-SP0",
"machine": "AMD64",
"name": "Windows",
"release": "10",
"version": "10.0.18362"
},
"task": {
"name": "update metadata",
"new": {
"experiment:sample": "KO_S20"
},
"old": {
"experiment:sample": "Combined_S20_TG_RhoA_Colon_CD45_Epcam"
}
},
"utc": {
"date": "2021-11-29",
"time": "21:46:42"
}
},
{
"libraries": {
"dckit": "0.12.16",
"dclab": "0.38.2",
"h5py": "3.5.0",
"imageio": "2.10.3",
"nptdms": "1.4.0",
"numpy": "1.19.3"
},
"python": {
"build": "tags/v3.8.0:fa919fd, Oct 14 2019 19:37:50",
"implementation": "CPython",
"version": "3.8.0"
},
"system": {
"info": "Windows-10-10.0.18362-SP0",
"machine": "AMD64",
"name": "Windows",
"release": "10",
"version": "10.0.18362"
},
"task": {
"name": "compress HDF5 data"
},
"utc": {
"date": "2021-11-30",
"time": "07:41:09"
}
},
{
"libraries": {
"dckit": "0.14.5",
"dclab": "0.47.0",
"h5py": "3.7.0",
"imageio": "2.10.3",
"nptdms": "1.6.0",
"numpy": "1.23.5"
},
"python": {
"build": "tags/v3.8.0:fa919fd, Oct 14 2019 19:37:50",
"implementation": "CPython",
"version": "3.8.0"
},
"system": {
"info": "Windows-10-10.0.18362-SP0",
"machine": "AMD64",
"name": "Windows",
"release": "10",
"version": "10.0.18362"
},
"task": {
"name": "update metadata",
"new": {
"experiment:sample": "Ctrl_S14"
},
"old": {
"experiment:sample": "KO_S20"
}
},
"utc": {
"date": "2023-01-19",
"time": "22:24:26"
}
}
]
dclab-compress
{
"files": [
{
"index": 1,
"md5-5M": "4b52f96e38bdb8eef9852d6c27177bc9",
"name": "Ctrl_S14.rtdc"
}
],
"libraries": {
"dclab": "0.47.2",
"h5py": "3.7.0",
"numpy": "1.23.5"
},
"python": {
"build": "tags/v3.9.13:6de2ca5, May 17 2022 16:36:42",
"implementation": "CPython",
"version": "3.9.13"
},
"system": {
"info": "Windows-10-10.0.18363-SP0",
"machine": "AMD64",
"name": "Windows",
"release": "10",
"version": "10.0.18363"
},
"utc": {
"date": "2023-01-19",
"time": "22:57:31"
}
}
dclab-compress-warnings
WrongConfigurationTypeWarning
in dclab.rtdc_dataset.config line 77:
Type of confguration key [fluorescence]: sample rate should be <class 'numbers.Integral'>, got
<class 'numpy.float64'>!
WrongConfigurationTypeWarning
in dclab.rtdc_dataset.config line 77:
Type of confguration key [imaging]: roi position x should be <class 'numbers.Integral'>, got
<class 'numpy.float64'>!
WrongConfigurationTypeWarning
in dclab.rtdc_dataset.config line 77:
Type of confguration key [imaging]: roi position y should be <class 'numbers.Integral'>, got
<class 'numpy.float64'>!
dclab-join
{
"files": [
{
"index": 1,
"name": "M001_data.rtdc",
"sha256": "e8f5852e04d9b49bd4fcf5de6a7ba23e7fa7178c93e0987d1b9a7dc6635aee1b"
},
{
"index": 2,
"name": "M002_data.rtdc",
"sha256": "dfd5970fa251ad8512398bd0d60630ed098ccfaacf362f41ef97fc7355c6cc3a"
},
{
"index": 3,
"name": "M003_data.rtdc",
"sha256": "f954e6f818b4199ca4ae69fd6d8eaa7401c8fe1344d2c1deae813a94f8d135e3"
},
{
"index": 4,
"name": "M004_data.rtdc",
"sha256": "755e45a15d9be0316b177140ef737fd9553ee40b226580e212ab0079901e892d"
}
],
"libraries": {
"dclab": "0.29.1",
"h5py": "2.10.0",
"imageio": "2.9.0",
"nptdms": "1.0.0",
"numpy": "1.19.2"
},
"python": {
"build": "tags/v3.6.8:3c6b436a57, Dec 24 2018 00:16:47",
"implementation": "CPython",
"version": "3.6.8"
},
"system": {
"info": "Windows-10-10.0.17134-SP0",
"machine": "AMD64",
"name": "Windows",
"release": "10",
"version": "10.0.17134"
},
"utc": {
"date": "2020-12-10",
"time": "15:25:14"
}
}
src-#1_log
[LOG] number of written datasets 0
[LOG] number of written datasets 1000
[LOG] number of written datasets 2000
src-#2_log
[LOG] number of written datasets 0
[LOG] number of written datasets 1000
[LOG] number of written datasets 2000
src-#3_log
[LOG] number of written datasets 0
[LOG] number of written datasets 1000
[LOG] number of written datasets 2000
[LOG] number of written datasets 3000
[LOG] number of written datasets 4000
[LOG] number of written datasets 5000
[LOG] number of written datasets 6000
[LOG] number of written datasets 7000
[LOG] number of written datasets 8000
[LOG] number of written datasets 9000
[LOG] number of written datasets 10000
[LOG] number of written datasets 11000
[LOG] number of written datasets 12000
src-#4_log
[LOG] number of written datasets 0
[LOG] number of written datasets 1000
[LOG] number of written datasets 2000
[LOG] number of written datasets 3000
[LOG] number of written datasets 4000
[LOG] number of written datasets 5000
[LOG] number of written datasets 6000
[LOG] number of written datasets 7000