Click on the log titles below to expand the log entries present in this DC resource.
dclab-export_2024-07-10_16.40.34
{"dclab version": [0, 60, 3], "kwargs": {"features": ["area_cvx", "area_msd", "circ", "contour", "fl1_area", "fl1_dist", "fl1_max", "fl1_npeaks", "fl1_pos", "fl1_width", "fl2_area", "fl2_dist", "fl2_max", "fl2_npeaks", "fl2_pos", "fl2_width", "frame", "image", "inert_ratio_cvx", "inert_ratio_raw", "mask", "nevents", "pos_x", "pos_y", "size_x", "size_y", "trace"], "filtered": true, "logs": false, "tables": false, "basins": false, "meta_prefix": "src_", "skip_checks": false}}
dclab-tdms2rtdc
{
"ancillary features": [
"mask"
],
"files": [
{
"index": 1,
"md5-5M": "0eead9892423468b640f7e12fada81b3",
"name": "M1_20170612_1543_dsRNA_S2_col.tdms"
}
],
"libraries": {
"dclab": "0.60.3",
"h5py": "3.11.0",
"imageio": "2.34.2",
"nptdms": "1.8.0",
"numpy": "1.26.4"
},
"python": {
"build": "tags/v3.11.1:a7a450f, Dec 6 2022 19:58:39",
"implementation": "CPython",
"version": "3.11.1"
},
"system": {
"info": "Windows-10-10.0.19045-SP0",
"machine": "AMD64",
"name": "Windows",
"release": "10",
"version": "10.0.19045"
},
"utc": {
"date": "2024-07-10",
"time": "14:40:56"
}
}
dclab-tdms2rtdc-warnings
LimitingExportSizeWarning
in dclab.rtdc_dataset.export line 305:
Not all features have the same length! Limiting output event count to 8066 (max 8067) in '8066'.
FG_Config.mcf
[Kamerasektion]
ConfigFileVersion=2.0;
Hersteller='Generic-CameraLink';
Typ='vas';
HapName='C:/Lib/SiliconSoftware/Runtime5.4.1/Hardware Applets/mE4VD4-CL/PR_BG_subtr_141204_ext_trig_noerode.hap';
Version='1.5';
LoadAppletId=0;
AktivePort=0;
[ID0]
FG_WIDTH=256;
FG_HEIGHT=96;
FG_TIMEOUT=1000000;
FG_FORMAT=3;
FG_PORT=0;
FG_GLOBAL_ACCESS=0;
Device1_Process0_UpperBits_BitOffset=4;
Device1_Process0_module9_SyncMode=0;
Device1_Process0_Camera_DvalMode=1;
Device1_Process0_Camera_FullMode=0;
Device1_Process0_DMA_PixelsPerLine=0;
Device1_Process0_DMA_BytesPerLine=0;
Device1_Process0_LowerBits_BitOffset=0;
Device1_Process0_Buffer1_XOffset=0;
Device1_Process0_Buffer1_XLength=256;
Device1_Process0_Buffer1_YOffset=0;
Device1_Process0_Buffer1_YLength=96;
Device1_Process0_Buffer1_FillLevel=75;
Device1_Process0_Buffer1_Overflow=0;
Device1_Process0_Buffer1_InfiniteSource=0;
Device1_Process0_Buffer0_XOffset=0;
Device1_Process0_Buffer0_XLength=256;
Device1_Process0_Buffer0_YOffset=0;
Device1_Process0_Buffer0_YLength=96;
Device1_Process0_Buffer0_FillLevel=75;
Device1_Process0_Buffer0_Overflow=0;
Device1_Process0_Buffer0_InfiniteSource=0;
Device1_Process0_module12_BufferWidth=400;
Device1_Process0_module12_BufferHeight=96;
Device1_Process0_module12_XOffset=0;
Device1_Process0_module12_XLength=256;
Device1_Process0_module12_YOffset=0;
Device1_Process0_module12_YLength=96;
Device1_Process0_module12_UpdateROI=1;
Device1_Process0_module12_CoefficientFile 0='coefficients_0.tif';
Device1_Process0_module12_LoadCoefficients=1;
Device1_Process0_module13_SyncMode=0;
Device1_Process0_module16_from=18446744073709551360;
Device1_Process0_module16_to=18446744073709551610;
Device1_Process0_module17_Value=0;
Device1_Process0_module20_PixelsPerLine=0;
Device1_Process0_module20_BytesPerLine=0;
Device1_Process0_module21_Number=0;
Device1_Process0_module26_ScaleFactorMaxBits=8;
Device1_Process0_module26_ScaleFactor=255;
Device1_Process0_module28_TriggerMode=2;
Device1_Process0_module28_ExsyncEnable=1;
Device1_Process0_module28_FlashEnable=1;
Device1_Process0_module28_SoftwareTrgPulse=1;
Device1_Process0_module28_SoftwareTrgIsBusy=0;
Device1_Process0_module28_ImgTrgInSource=0;
Device1_Process0_module28_ImgTrgInPolarity=0;
Device1_Process0_module28_ImgTrgDownscale=1;
Device1_Process0_module28_Accuracy=2;
Device1_Process0_module28_ExsyncFramesPerSec=2000;
Device1_Process0_module28_ExsyncExposure=20;
Device1_Process0_module28_ExsyncDelay=0;
Device1_Process0_module28_ExsyncPolarity=0;
Device1_Process0_module28_FlashDelay=0;
Device1_Process0_module28_SoftwareTrgDeadTime=10000;
Device1_Process0_module28_FlashPolarity=1;
Device1_Process0_module28_CC1output=0;
Device1_Process0_module28_CC2output=8;
Device1_Process0_module28_CC3output=8;
Device1_Process0_module28_CC4output=8;
Device1_Process0_module28_DebouncingMaxTime=65.52;
Device1_Process0_module28_DebouncingTime=0.112;
[ID1]
FG_WIDTH=256;
FG_HEIGHT=96;
FG_TIMEOUT=1000000;
FG_FORMAT=3;
M1_camera.ini
[Framerate]
Shutter Time = 20
Frame Rate = 2000
Tap Mode = 8x8 Bit
Tap Code = 6
[ROI]
x-pos = 504
y-pos = 472
width = 256
height = 96
M1_log.ini
[EVENT LOG] fRT-DC V1.06170206
Reset global variables..
Circular Buffer Size is: 1000000
Ambient Temperature [C] = 24.7854
Start pulse train for BG Aquisition..
Now refreshing the background image stored in the framegrabber
STATE: 3
Starting time: 2.44561e+009
Use analog input: pci/ai4,pci/ai5
Samplerate per channel: 500000
Buffersize in byte: 1000000
Rising Edge, Continuous Sampling
N_callback: 125
Callbacks per frame: 2
Callback registered
Configure tasks for online measurement..
Timing: start directly
Freq: 2000
Duty cycle: 0.5
Reset global variables: i0, i1, samplesThisRun
Start the Fragegrabber ..
Start the NI-DAQ Card..
Stop after time: 0
Stop after nr. of cells: 10000
Ran for 550 frames Cell Events: 29 mean_circ: 0.960033
Ran for 1050 frames Cell Events: 50 mean_circ: 0.950429
Ran for 1550 frames Cell Events: 59 mean_circ: 0.952401
Ran for 2550 frames Cell Events: 97 mean_circ: 0.949926
Ran for 4050 frames Cell Events: 175 mean_circ: 0.951469
Ran for 4550 frames Cell Events: 204 mean_circ: 0.952323
Ran for 5050 frames Cell Events: 224 mean_circ: 0.953127
Ran for 5550 frames Cell Events: 240 mean_circ: 0.952954
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Ran for 6550 frames Cell Events: 284 mean_circ: 0.952171
Ran for 7050 frames Cell Events: 301 mean_circ: 0.952503
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Ran for 10050 frames Cell Events: 414 mean_circ: 0.953183
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Ran for 11550 frames Cell Events: 470 mean_circ: 0.953003
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Ran for 13550 frames Cell Events: 565 mean_circ: 0.953049
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Ran for 76550 frames Cell Events: 2975 mean_circ: 0.950874
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Ran for 83050 frames Cell Events: 3245 mean_circ: 0.950832
Ran for 84050 frames Cell Events: 3289 mean_circ: 0.950743
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Ran for 86050 frames Cell Events: 3365 mean_circ: 0.950711
Ran for 86550 frames Cell Events: 3386 mean_circ: 0.950824
Ran for 87050 frames Cell Events: 3409 mean_circ: 0.950825
Ran for 87550 frames Cell Events: 3429 mean_circ: 0.950792
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Ran for 89550 frames Cell Events: 3489 mean_circ: 0.950934
Ran for 91050 frames Cell Events: 3562 mean_circ: 0.950846
Ran for 91550 frames Cell Events: 3578 mean_circ: 0.950824
Ran for 92550 frames Cell Events: 3632 mean_circ: 0.950737
Ran for 93050 frames Cell Events: 3651 mean_circ: 0.950743
Ran for 93550 frames Cell Events: 3671 mean_circ: 0.950777
Ran for 94050 frames Cell Events: 3697 mean_circ: 0.950801
Ran for 95550 frames Cell Events: 3772 mean_circ: 0.950756
Ran for 96050 frames Cell Events: 3780 mean_circ: 0.950771
Ran for 96550 frames Cell Events: 3807 mean_circ: 0.950779
Ran for 97050 frames Cell Events: 3824 mean_circ: 0.95077
Ran for 97550 frames Cell Events: 3846 mean_circ: 0.950814
Ran for 98050 frames Cell Events: 3870 mean_circ: 0.950836
Ran for 100050 frames Cell Events: 3975 mean_circ: 0.950969
Ran for 101550 frames Cell Events: 4054 mean_circ: 0.951001
Ran for 102050 frames Cell Events: 4073 mean_circ: 0.950989
Ran for 102550 frames Cell Events: 4092 mean_circ: 0.951043
Ran for 103050 frames Cell Events: 4114 mean_circ: 0.951017
Ran for 103550 frames Cell Events: 4138 mean_circ: 0.951039
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Ran for 106550 frames Cell Events: 4254 mean_circ: 0.950961
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Ran for 121550 frames Cell Events: 4877 mean_circ: 0.950954
Ran for 122050 frames Cell Events: 4900 mean_circ: 0.950969
Ran for 124550 frames Cell Events: 5018 mean_circ: 0.951006
Ran for 125050 frames Cell Events: 5036 mean_circ: 0.950971
Ran for 126050 frames Cell Events: 5088 mean_circ: 0.951003
Ran for 126550 frames Cell Events: 5110 mean_circ: 0.95094
Ran for 127550 frames Cell Events: 5161 mean_circ: 0.950912
Ran for 128050 frames Cell Events: 5182 mean_circ: 0.950884
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Ran for 131550 frames Cell Events: 5314 mean_circ: 0.950958
Ran for 132050 frames Cell Events: 5349 mean_circ: 0.950958
Ran for 134050 frames Cell Events: 5438 mean_circ: 0.950926
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Ran for 141550 frames Cell Events: 5753 mean_circ: 0.951056
Ran for 143050 frames Cell Events: 5807 mean_circ: 0.951115
Ran for 143550 frames Cell Events: 5829 mean_circ: 0.951162
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Ran for 146050 frames Cell Events: 5924 mean_circ: 0.951155
Ran for 146550 frames Cell Events: 5943 mean_circ: 0.95117
Ran for 147050 frames Cell Events: 5976 mean_circ: 0.951177
Ran for 147550 frames Cell Events: 5993 mean_circ: 0.951168
Ran for 148050 frames Cell Events: 6018 mean_circ: 0.951161
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Ran for 197050 frames Cell Events: 7982 mean_circ: 0.95136
Ran for 197550 frames Cell Events: 8000 mean_circ: 0.951368
Ran for 198050 frames Cell Events: 8020 mean_circ: 0.951376
Ran for 199050 frames Cell Events: 8056 mean_circ: 0.951359
End this measurment..
Stopping time: 2.44571e+009
****************************************
Measurement finished
Mean Circularitiy: 0.95136
Mean Area: 584
Mean FL-1 intensity: 3044.38
Mean FL-2 intensity: 3531.98
Mean FL-3 intensity: 0
frames processed: 199198
Total Time: 99790.3ms
Number of Runs (new bg img) 0
Frames collected: 199410
Skipped frames: 31887
Rescued Frames: 2490043
Samples DAQ: 49852441
Samples written: 99704584
Samples per Channel: 49852292
FPS: 1998.29
Samples per second: 499571
Expected samples/s: 500000
Events: 8067
Events per second: 80.8395
jumped back (PMT): 4867
#Frames read, frequency
# 0 frames :283782
# 1 frames :99414
# 2 frames :4478
# 3 frames :1584
# 4 frames :717
# 5 frames :336
# 6 frames :2242
# 7 frames :1337
# 8 frames :1044
# 9 frames :524
# 10 frames :524
# 11 frames :996
# 12 frames :422
# 13 frames :211
# 14 frames :245
# 15 frames :160
# 16 frames :159
# 17 frames :139
# 18 frames :71
# 19 frames :65
# 20 frames :54
# 21 frames :53
# 22 frames :48
# 23 frames :45
# 24 frames :19
# 25 frames :21
# 26 frames :21
# 27 frames :12
# 28 frames :7
# 29 frames :7
# 30 frames :7
# 31 frames :5
# 32 frames :5
# 33 frames :7
# 34 frames :1
# 35 frames :3
# 36 frames :1
# 37 frames :5
# 38 frames :1
# 39 frames :5
# 40 frames :3
# 41 frames :2
# 42 frames :3
# 45 frames :2
# 46 frames :1
# 49 frames :1
# 51 frames :2
# 54 frames :1
# 56 frames :1
M1_para.ini
[General]
Measurement Number = 1
Flow Rate [ul/s] = 0.04
Region = "Channel"
Channel width = 20
Current LED = 100
[Image]
Setup = Cell_Flow_2 + Fluor
Bin Ops = 5
Blur = 0
Trig Thresh = 50
t1 = -256
t2 = -6
Pix Size = 0.34
Cell Min = 6
Cell Max = 50
Thresh = 6
Diff_Method = 1
Margin = 0
#[FLUOR]
#fRT-DC V1.06170206
#Samplerate = 500000
#Bitdepthraw = 16
#Format = int16
#ADCmin = -1
#ADCmax = 1
#FL-Channels = 2
Laser Power 488 [mW] = 10
Laser Power 561 [mW] = 35
Laser Power 640 [mW] = 0
Ambient Temp. [C] = 24.7854
parameters.txt
#fRT-DC Configuration file
# You may change the values here before a measurement.
debug 0
hull 1
x_size 256
y_size 96
x_pos 504
y_pos 464
pix_size 0.34
cell_min 6
cell_max_x 50
cell_max_y 50
cell_aspect_min 0
cell_aspect_max 10
threshold1 -256
threshold2 -6
trig_threshold 50
MARGIN 0
write_videos 0
write_phot_det 0
show_video 1
write_events 1
fps 2000
samplesperframe 300
Vmin -1
Vmax 1
invertCh1 1
invertCh2 1
invertCh3 1
invertChX 1
samplerate 500000
bg_img 100
channel_width 20
current_led 100
pulse_led 2
binary_ops 5
blur 0
median_pmt 5
software_binops 1
flowctrl 0
flowwait 60
numberofchannels 2
firstchannel 4
secondchannel 5
thirdchannel -6
laser488 10
laser561 35
laser640 0
peakcountthreshold 1000
peakDipRatio 0.8
offsetFL1 0
offsetFL2 0
offsetFL3 0
rollingAverage 100
stopCell 10000
stopTime 0
minFL1 400
minFL2 668
minFL3 -32768
maxFL1 32767
maxFL2 32767
maxFL3 32767
setTimingAutomatic 1
plotWidth 0
getBrightness 0
intellPeak 0