Click on the log titles below to expand the log entries present in this DC resource.
dclab-export_2024-07-10_13.56.06
{"dclab version": [0, 60, 3], "kwargs": {"features": ["area_cvx", "area_msd", "circ", "contour", "fl1_area", "fl1_dist", "fl1_max", "fl1_npeaks", "fl1_pos", "fl1_width", "fl2_area", "fl2_dist", "fl2_max", "fl2_npeaks", "fl2_pos", "fl2_width", "frame", "image", "inert_ratio_cvx", "inert_ratio_raw", "mask", "nevents", "pos_x", "pos_y", "size_x", "size_y", "trace"], "filtered": true, "logs": false, "tables": false, "basins": false, "meta_prefix": "src_", "skip_checks": false}}
dclab-tdms2rtdc
{
"ancillary features": [
"mask"
],
"files": [
{
"index": 1,
"md5-5M": "b06dd89729ce7e34a029feb481153fea",
"name": "M1_20170606_1815_dsRNA_Z4_col.tdms"
}
],
"libraries": {
"dclab": "0.60.3",
"h5py": "3.11.0",
"imageio": "2.34.2",
"nptdms": "1.8.0",
"numpy": "1.26.4"
},
"python": {
"build": "tags/v3.11.1:a7a450f, Dec 6 2022 19:58:39",
"implementation": "CPython",
"version": "3.11.1"
},
"system": {
"info": "Windows-10-10.0.19045-SP0",
"machine": "AMD64",
"name": "Windows",
"release": "10",
"version": "10.0.19045"
},
"utc": {
"date": "2024-07-10",
"time": "11:56:31"
}
}
dclab-tdms2rtdc-warnings
LimitingExportSizeWarning
in dclab.rtdc_dataset.export line 305:
Not all features have the same length! Limiting output event count to 10000 (max 10001) in
'10000'.
FG_Config.mcf
[Kamerasektion]
ConfigFileVersion=2.0;
Hersteller='Generic-CameraLink';
Typ='vas';
HapName='C:/Lib/SiliconSoftware/Runtime5.4.1/Hardware Applets/mE4VD4-CL/PR_BG_subtr_141204_ext_trig_noerode.hap';
Version='1.5';
LoadAppletId=0;
AktivePort=0;
[ID0]
FG_WIDTH=256;
FG_HEIGHT=96;
FG_TIMEOUT=1000000;
FG_FORMAT=3;
FG_PORT=0;
FG_GLOBAL_ACCESS=0;
Device1_Process0_UpperBits_BitOffset=4;
Device1_Process0_module9_SyncMode=0;
Device1_Process0_Camera_DvalMode=1;
Device1_Process0_Camera_FullMode=0;
Device1_Process0_DMA_PixelsPerLine=0;
Device1_Process0_DMA_BytesPerLine=0;
Device1_Process0_LowerBits_BitOffset=0;
Device1_Process0_Buffer1_XOffset=0;
Device1_Process0_Buffer1_XLength=256;
Device1_Process0_Buffer1_YOffset=0;
Device1_Process0_Buffer1_YLength=96;
Device1_Process0_Buffer1_FillLevel=75;
Device1_Process0_Buffer1_Overflow=0;
Device1_Process0_Buffer1_InfiniteSource=0;
Device1_Process0_Buffer0_XOffset=0;
Device1_Process0_Buffer0_XLength=256;
Device1_Process0_Buffer0_YOffset=0;
Device1_Process0_Buffer0_YLength=96;
Device1_Process0_Buffer0_FillLevel=75;
Device1_Process0_Buffer0_Overflow=0;
Device1_Process0_Buffer0_InfiniteSource=0;
Device1_Process0_module12_BufferWidth=400;
Device1_Process0_module12_BufferHeight=96;
Device1_Process0_module12_XOffset=0;
Device1_Process0_module12_XLength=256;
Device1_Process0_module12_YOffset=0;
Device1_Process0_module12_YLength=96;
Device1_Process0_module12_UpdateROI=1;
Device1_Process0_module12_CoefficientFile 0='coefficients_0.tif';
Device1_Process0_module12_LoadCoefficients=1;
Device1_Process0_module13_SyncMode=0;
Device1_Process0_module16_from=18446744073709551360;
Device1_Process0_module16_to=18446744073709551610;
Device1_Process0_module17_Value=0;
Device1_Process0_module20_PixelsPerLine=0;
Device1_Process0_module20_BytesPerLine=0;
Device1_Process0_module21_Number=0;
Device1_Process0_module26_ScaleFactorMaxBits=8;
Device1_Process0_module26_ScaleFactor=255;
Device1_Process0_module28_TriggerMode=2;
Device1_Process0_module28_ExsyncEnable=1;
Device1_Process0_module28_FlashEnable=1;
Device1_Process0_module28_SoftwareTrgPulse=1;
Device1_Process0_module28_SoftwareTrgIsBusy=0;
Device1_Process0_module28_ImgTrgInSource=0;
Device1_Process0_module28_ImgTrgInPolarity=0;
Device1_Process0_module28_ImgTrgDownscale=1;
Device1_Process0_module28_Accuracy=2;
Device1_Process0_module28_ExsyncFramesPerSec=2000;
Device1_Process0_module28_ExsyncExposure=20;
Device1_Process0_module28_ExsyncDelay=0;
Device1_Process0_module28_ExsyncPolarity=0;
Device1_Process0_module28_FlashDelay=0;
Device1_Process0_module28_SoftwareTrgDeadTime=10000;
Device1_Process0_module28_FlashPolarity=1;
Device1_Process0_module28_CC1output=0;
Device1_Process0_module28_CC2output=8;
Device1_Process0_module28_CC3output=8;
Device1_Process0_module28_CC4output=8;
Device1_Process0_module28_DebouncingMaxTime=65.52;
Device1_Process0_module28_DebouncingTime=0.112;
[ID1]
FG_WIDTH=256;
FG_HEIGHT=96;
FG_TIMEOUT=1000000;
FG_FORMAT=3;
M1_camera.ini
[Framerate]
Shutter Time = 20
Frame Rate = 2000
Tap Mode = 8x8 Bit
Tap Code = 6
[ROI]
x-pos = 504
y-pos = 472
width = 256
height = 96
M1_log.ini
[EVENT LOG] fRT-DC V1.06170206
Reset global variables..
Circular Buffer Size is: 1000000
Ambient Temperature [C] = 25.2061
Start pulse train for BG Aquisition..
Now refreshing the background image stored in the framegrabber
STATE: 3
Starting time: 1.93635e+009
Use analog input: pci/ai4,pci/ai5
Samplerate per channel: 500000
Buffersize in byte: 1000000
Rising Edge, Continuous Sampling
N_callback: 125
Callbacks per frame: 2
Callback registered
Configure tasks for online measurement..
Timing: start directly
Freq: 2000
Duty cycle: 0.5
Reset global variables: i0, i1, samplesThisRun
Start the Fragegrabber ..
Start the NI-DAQ Card..
Stop after time: 0
Stop after nr. of cells: 10000
Ran for 550 frames Cell Events: 23 mean_circ: 0.941624
Ran for 2050 frames Cell Events: 75 mean_circ: 0.926658
Ran for 3550 frames Cell Events: 130 mean_circ: 0.927009
Ran for 5050 frames Cell Events: 179 mean_circ: 0.931362
Ran for 5550 frames Cell Events: 191 mean_circ: 0.932175
Ran for 6550 frames Cell Events: 236 mean_circ: 0.934052
Ran for 7050 frames Cell Events: 260 mean_circ: 0.933795
Ran for 7550 frames Cell Events: 281 mean_circ: 0.934435
Ran for 8050 frames Cell Events: 306 mean_circ: 0.934372
Ran for 9050 frames Cell Events: 347 mean_circ: 0.935461
Ran for 9550 frames Cell Events: 366 mean_circ: 0.935992
Ran for 10050 frames Cell Events: 386 mean_circ: 0.93564
Ran for 11550 frames Cell Events: 430 mean_circ: 0.935356
Ran for 12050 frames Cell Events: 440 mean_circ: 0.935793
Ran for 12550 frames Cell Events: 465 mean_circ: 0.935947
Ran for 13550 frames Cell Events: 508 mean_circ: 0.935792
Ran for 14050 frames Cell Events: 527 mean_circ: 0.93586
Ran for 15550 frames Cell Events: 593 mean_circ: 0.935768
Ran for 16550 frames Cell Events: 618 mean_circ: 0.935749
Ran for 19550 frames Cell Events: 724 mean_circ: 0.936589
Ran for 20550 frames Cell Events: 770 mean_circ: 0.935802
Ran for 21050 frames Cell Events: 784 mean_circ: 0.935896
Ran for 21550 frames Cell Events: 796 mean_circ: 0.935921
Ran for 22550 frames Cell Events: 840 mean_circ: 0.935917
Ran for 23050 frames Cell Events: 859 mean_circ: 0.936349
Ran for 23550 frames Cell Events: 871 mean_circ: 0.936399
Ran for 24050 frames Cell Events: 892 mean_circ: 0.936639
Ran for 25050 frames Cell Events: 922 mean_circ: 0.936214
Ran for 26050 frames Cell Events: 969 mean_circ: 0.935814
Ran for 27550 frames Cell Events: 1027 mean_circ: 0.935679
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Ran for 30050 frames Cell Events: 1117 mean_circ: 0.936341
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Ran for 31550 frames Cell Events: 1161 mean_circ: 0.936459
Ran for 32050 frames Cell Events: 1177 mean_circ: 0.936273
Ran for 32550 frames Cell Events: 1202 mean_circ: 0.936521
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Ran for 33550 frames Cell Events: 1226 mean_circ: 0.936074
Ran for 34050 frames Cell Events: 1252 mean_circ: 0.936253
Ran for 34550 frames Cell Events: 1267 mean_circ: 0.936159
Ran for 35550 frames Cell Events: 1313 mean_circ: 0.936666
Ran for 36050 frames Cell Events: 1330 mean_circ: 0.93638
Ran for 36550 frames Cell Events: 1357 mean_circ: 0.936223
Ran for 37050 frames Cell Events: 1377 mean_circ: 0.936502
Ran for 38050 frames Cell Events: 1402 mean_circ: 0.936662
Ran for 39050 frames Cell Events: 1431 mean_circ: 0.936615
Ran for 39550 frames Cell Events: 1450 mean_circ: 0.936684
Ran for 41550 frames Cell Events: 1531 mean_circ: 0.936539
Ran for 42050 frames Cell Events: 1549 mean_circ: 0.93637
Ran for 42550 frames Cell Events: 1572 mean_circ: 0.936456
Ran for 43550 frames Cell Events: 1608 mean_circ: 0.93649
Ran for 44550 frames Cell Events: 1633 mean_circ: 0.936503
Ran for 45050 frames Cell Events: 1643 mean_circ: 0.936572
Ran for 46050 frames Cell Events: 1679 mean_circ: 0.936569
Ran for 47050 frames Cell Events: 1723 mean_circ: 0.936662
Ran for 47550 frames Cell Events: 1734 mean_circ: 0.936676
Ran for 49050 frames Cell Events: 1781 mean_circ: 0.936447
Ran for 49550 frames Cell Events: 1791 mean_circ: 0.936375
Ran for 50050 frames Cell Events: 1808 mean_circ: 0.936344
Ran for 50550 frames Cell Events: 1824 mean_circ: 0.936409
Ran for 51050 frames Cell Events: 1851 mean_circ: 0.936215
Ran for 52050 frames Cell Events: 1897 mean_circ: 0.93591
Ran for 53050 frames Cell Events: 1931 mean_circ: 0.935779
Ran for 53550 frames Cell Events: 1945 mean_circ: 0.935806
Ran for 54050 frames Cell Events: 1969 mean_circ: 0.935761
Ran for 54550 frames Cell Events: 1986 mean_circ: 0.935738
Ran for 55050 frames Cell Events: 2005 mean_circ: 0.935639
Ran for 55550 frames Cell Events: 2022 mean_circ: 0.935898
Ran for 58550 frames Cell Events: 2113 mean_circ: 0.935586
Ran for 59050 frames Cell Events: 2133 mean_circ: 0.935645
Ran for 60050 frames Cell Events: 2173 mean_circ: 0.93562
Ran for 61050 frames Cell Events: 2214 mean_circ: 0.935667
Ran for 62050 frames Cell Events: 2250 mean_circ: 0.935748
Ran for 62550 frames Cell Events: 2268 mean_circ: 0.935642
Ran for 63050 frames Cell Events: 2281 mean_circ: 0.935618
Ran for 63550 frames Cell Events: 2308 mean_circ: 0.935576
Ran for 65050 frames Cell Events: 2366 mean_circ: 0.93572
Ran for 65550 frames Cell Events: 2383 mean_circ: 0.935551
Ran for 66050 frames Cell Events: 2407 mean_circ: 0.935517
Ran for 67050 frames Cell Events: 2443 mean_circ: 0.935363
Ran for 67550 frames Cell Events: 2465 mean_circ: 0.935341
Ran for 69550 frames Cell Events: 2543 mean_circ: 0.935365
Ran for 70050 frames Cell Events: 2561 mean_circ: 0.935377
Ran for 70550 frames Cell Events: 2574 mean_circ: 0.935521
Ran for 71050 frames Cell Events: 2585 mean_circ: 0.93557
Ran for 73550 frames Cell Events: 2696 mean_circ: 0.935652
Ran for 75050 frames Cell Events: 2747 mean_circ: 0.935637
Ran for 75550 frames Cell Events: 2763 mean_circ: 0.935588
Ran for 76050 frames Cell Events: 2777 mean_circ: 0.935634
Ran for 76550 frames Cell Events: 2800 mean_circ: 0.935675
Ran for 77050 frames Cell Events: 2812 mean_circ: 0.935743
Ran for 77550 frames Cell Events: 2827 mean_circ: 0.935745
Ran for 78550 frames Cell Events: 2874 mean_circ: 0.935599
Ran for 79550 frames Cell Events: 2911 mean_circ: 0.935639
Ran for 80050 frames Cell Events: 2925 mean_circ: 0.935647
Ran for 81550 frames Cell Events: 2964 mean_circ: 0.935817
Ran for 82050 frames Cell Events: 2978 mean_circ: 0.935824
Ran for 83050 frames Cell Events: 3028 mean_circ: 0.935683
Ran for 83550 frames Cell Events: 3057 mean_circ: 0.935716
Ran for 84050 frames Cell Events: 3077 mean_circ: 0.935677
Ran for 85550 frames Cell Events: 3135 mean_circ: 0.935537
Ran for 86550 frames Cell Events: 3171 mean_circ: 0.935601
Ran for 87050 frames Cell Events: 3191 mean_circ: 0.935567
Ran for 88050 frames Cell Events: 3233 mean_circ: 0.935482
Ran for 88550 frames Cell Events: 3250 mean_circ: 0.935539
Ran for 89550 frames Cell Events: 3305 mean_circ: 0.935465
Ran for 90050 frames Cell Events: 3331 mean_circ: 0.935393
Ran for 92550 frames Cell Events: 3431 mean_circ: 0.935545
Ran for 93050 frames Cell Events: 3452 mean_circ: 0.935498
Ran for 93550 frames Cell Events: 3467 mean_circ: 0.935482
Ran for 94550 frames Cell Events: 3508 mean_circ: 0.9356
Ran for 95050 frames Cell Events: 3520 mean_circ: 0.935614
Ran for 96050 frames Cell Events: 3559 mean_circ: 0.935693
Ran for 96550 frames Cell Events: 3569 mean_circ: 0.935602
Ran for 99550 frames Cell Events: 3701 mean_circ: 0.935728
Ran for 100050 frames Cell Events: 3721 mean_circ: 0.935751
Ran for 100550 frames Cell Events: 3738 mean_circ: 0.935734
Ran for 102050 frames Cell Events: 3805 mean_circ: 0.935592
Ran for 102550 frames Cell Events: 3823 mean_circ: 0.935529
Ran for 103050 frames Cell Events: 3834 mean_circ: 0.935528
Ran for 103550 frames Cell Events: 3851 mean_circ: 0.935554
Ran for 104550 frames Cell Events: 3888 mean_circ: 0.935565
Ran for 106050 frames Cell Events: 3939 mean_circ: 0.935462
Ran for 106550 frames Cell Events: 3955 mean_circ: 0.935498
Ran for 107550 frames Cell Events: 3984 mean_circ: 0.935478
Ran for 108050 frames Cell Events: 3996 mean_circ: 0.935482
Ran for 108550 frames Cell Events: 4009 mean_circ: 0.935479
Ran for 109550 frames Cell Events: 4040 mean_circ: 0.935442
Ran for 110050 frames Cell Events: 4058 mean_circ: 0.935464
Ran for 110550 frames Cell Events: 4081 mean_circ: 0.935482
Ran for 111050 frames Cell Events: 4107 mean_circ: 0.935401
Ran for 111550 frames Cell Events: 4121 mean_circ: 0.93532
Ran for 113050 frames Cell Events: 4181 mean_circ: 0.935286
Ran for 114050 frames Cell Events: 4223 mean_circ: 0.935236
Ran for 115050 frames Cell Events: 4255 mean_circ: 0.935164
Ran for 115550 frames Cell Events: 4271 mean_circ: 0.935266
Ran for 116050 frames Cell Events: 4282 mean_circ: 0.935302
Ran for 116550 frames Cell Events: 4304 mean_circ: 0.935325
Ran for 117050 frames Cell Events: 4319 mean_circ: 0.93532
Ran for 118550 frames Cell Events: 4366 mean_circ: 0.935345
Ran for 119050 frames Cell Events: 4384 mean_circ: 0.935353
Ran for 119550 frames Cell Events: 4398 mean_circ: 0.935313
Ran for 120550 frames Cell Events: 4438 mean_circ: 0.935343
Ran for 121050 frames Cell Events: 4457 mean_circ: 0.935357
Ran for 122050 frames Cell Events: 4495 mean_circ: 0.935267
Ran for 122550 frames Cell Events: 4506 mean_circ: 0.935302
Ran for 123050 frames Cell Events: 4523 mean_circ: 0.93532
Ran for 124050 frames Cell Events: 4554 mean_circ: 0.935291
Ran for 124550 frames Cell Events: 4578 mean_circ: 0.93529
Ran for 125550 frames Cell Events: 4600 mean_circ: 0.935317
Ran for 126550 frames Cell Events: 4645 mean_circ: 0.9353
Ran for 127050 frames Cell Events: 4672 mean_circ: 0.935291
Ran for 127550 frames Cell Events: 4686 mean_circ: 0.935252
Ran for 129550 frames Cell Events: 4760 mean_circ: 0.935028
Ran for 130550 frames Cell Events: 4795 mean_circ: 0.935145
Ran for 133050 frames Cell Events: 4895 mean_circ: 0.935224
Ran for 133550 frames Cell Events: 4909 mean_circ: 0.935218
Ran for 134550 frames Cell Events: 4942 mean_circ: 0.935156
Ran for 135550 frames Cell Events: 4963 mean_circ: 0.935154
Ran for 137050 frames Cell Events: 5022 mean_circ: 0.935275
Ran for 137550 frames Cell Events: 5040 mean_circ: 0.935251
Ran for 138050 frames Cell Events: 5059 mean_circ: 0.935298
Ran for 140050 frames Cell Events: 5141 mean_circ: 0.935147
Ran for 140550 frames Cell Events: 5158 mean_circ: 0.935118
Ran for 141050 frames Cell Events: 5181 mean_circ: 0.934975
Ran for 141550 frames Cell Events: 5213 mean_circ: 0.934954
Ran for 142050 frames Cell Events: 5238 mean_circ: 0.934913
Ran for 143050 frames Cell Events: 5266 mean_circ: 0.934958
Ran for 143550 frames Cell Events: 5283 mean_circ: 0.934963
Ran for 144050 frames Cell Events: 5300 mean_circ: 0.93497
Ran for 145550 frames Cell Events: 5361 mean_circ: 0.934946
Ran for 146050 frames Cell Events: 5375 mean_circ: 0.934938
Ran for 146550 frames Cell Events: 5389 mean_circ: 0.934904
Ran for 147050 frames Cell Events: 5408 mean_circ: 0.93488
Ran for 148050 frames Cell Events: 5455 mean_circ: 0.934858
Ran for 150050 frames Cell Events: 5515 mean_circ: 0.934825
Ran for 151050 frames Cell Events: 5555 mean_circ: 0.934904
Ran for 151550 frames Cell Events: 5574 mean_circ: 0.934937
Ran for 152050 frames Cell Events: 5589 mean_circ: 0.934946
Ran for 152550 frames Cell Events: 5604 mean_circ: 0.934947
Ran for 153550 frames Cell Events: 5630 mean_circ: 0.934905
Ran for 155050 frames Cell Events: 5685 mean_circ: 0.934863
Ran for 155550 frames Cell Events: 5704 mean_circ: 0.934902
Ran for 156050 frames Cell Events: 5712 mean_circ: 0.934909
Ran for 156550 frames Cell Events: 5733 mean_circ: 0.934834
Ran for 157050 frames Cell Events: 5753 mean_circ: 0.934789
Ran for 157550 frames Cell Events: 5774 mean_circ: 0.934788
Ran for 158550 frames Cell Events: 5813 mean_circ: 0.934811
Ran for 159550 frames Cell Events: 5846 mean_circ: 0.934802
Ran for 160050 frames Cell Events: 5867 mean_circ: 0.934806
Ran for 160550 frames Cell Events: 5879 mean_circ: 0.934816
Ran for 161050 frames Cell Events: 5901 mean_circ: 0.934748
Ran for 162050 frames Cell Events: 5940 mean_circ: 0.934735
Ran for 164050 frames Cell Events: 6027 mean_circ: 0.93474
Ran for 165050 frames Cell Events: 6061 mean_circ: 0.934669
Ran for 165550 frames Cell Events: 6074 mean_circ: 0.934598
Ran for 166050 frames Cell Events: 6093 mean_circ: 0.934561
Ran for 166550 frames Cell Events: 6118 mean_circ: 0.934521
Ran for 167050 frames Cell Events: 6144 mean_circ: 0.934521
Ran for 167550 frames Cell Events: 6159 mean_circ: 0.934546
Ran for 168550 frames Cell Events: 6192 mean_circ: 0.934475
Ran for 169050 frames Cell Events: 6214 mean_circ: 0.934473
Ran for 169550 frames Cell Events: 6226 mean_circ: 0.93449
Ran for 170050 frames Cell Events: 6249 mean_circ: 0.934469
Ran for 170550 frames Cell Events: 6271 mean_circ: 0.934455
Ran for 171050 frames Cell Events: 6294 mean_circ: 0.934404
Ran for 172050 frames Cell Events: 6335 mean_circ: 0.934392
Ran for 172550 frames Cell Events: 6358 mean_circ: 0.934371
Ran for 173550 frames Cell Events: 6389 mean_circ: 0.934317
Ran for 174550 frames Cell Events: 6422 mean_circ: 0.934294
Ran for 175550 frames Cell Events: 6463 mean_circ: 0.934303
Ran for 176050 frames Cell Events: 6480 mean_circ: 0.934322
Ran for 177050 frames Cell Events: 6526 mean_circ: 0.934347
Ran for 179050 frames Cell Events: 6601 mean_circ: 0.93441
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Ran for 181550 frames Cell Events: 6681 mean_circ: 0.934457
Ran for 182550 frames Cell Events: 6723 mean_circ: 0.934371
Ran for 183050 frames Cell Events: 6735 mean_circ: 0.934392
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Ran for 192050 frames Cell Events: 7046 mean_circ: 0.934376
Ran for 192550 frames Cell Events: 7072 mean_circ: 0.934358
Ran for 193050 frames Cell Events: 7090 mean_circ: 0.934397
Ran for 193550 frames Cell Events: 7114 mean_circ: 0.934395
Ran for 194050 frames Cell Events: 7138 mean_circ: 0.934433
Ran for 196050 frames Cell Events: 7216 mean_circ: 0.934416
Ran for 199050 frames Cell Events: 7371 mean_circ: 0.934285
Ran for 199550 frames Cell Events: 7388 mean_circ: 0.934261
Ran for 200050 frames Cell Events: 7405 mean_circ: 0.934241
Ran for 200550 frames Cell Events: 7429 mean_circ: 0.934228
Ran for 201550 frames Cell Events: 7454 mean_circ: 0.934199
Ran for 202050 frames Cell Events: 7466 mean_circ: 0.934214
Ran for 202550 frames Cell Events: 7477 mean_circ: 0.934231
Ran for 203050 frames Cell Events: 7499 mean_circ: 0.934189
Ran for 203550 frames Cell Events: 7514 mean_circ: 0.934198
Ran for 204050 frames Cell Events: 7540 mean_circ: 0.934225
Ran for 205050 frames Cell Events: 7571 mean_circ: 0.934185
Ran for 205550 frames Cell Events: 7596 mean_circ: 0.934228
Ran for 206050 frames Cell Events: 7616 mean_circ: 0.93422
Ran for 207050 frames Cell Events: 7644 mean_circ: 0.934183
Ran for 207550 frames Cell Events: 7652 mean_circ: 0.934194
Ran for 208050 frames Cell Events: 7666 mean_circ: 0.93415
Ran for 210050 frames Cell Events: 7738 mean_circ: 0.934072
Ran for 210550 frames Cell Events: 7762 mean_circ: 0.934095
Ran for 211050 frames Cell Events: 7778 mean_circ: 0.934093
Ran for 211550 frames Cell Events: 7791 mean_circ: 0.934088
Ran for 212050 frames Cell Events: 7804 mean_circ: 0.934093
Ran for 212550 frames Cell Events: 7829 mean_circ: 0.934072
Ran for 213050 frames Cell Events: 7850 mean_circ: 0.934044
Ran for 214050 frames Cell Events: 7894 mean_circ: 0.934062
Ran for 214550 frames Cell Events: 7912 mean_circ: 0.934044
Ran for 215050 frames Cell Events: 7931 mean_circ: 0.934035
Ran for 215550 frames Cell Events: 7948 mean_circ: 0.934038
Ran for 216050 frames Cell Events: 7962 mean_circ: 0.934027
Ran for 216550 frames Cell Events: 7982 mean_circ: 0.934014
Ran for 217050 frames Cell Events: 7993 mean_circ: 0.934013
Ran for 218050 frames Cell Events: 8035 mean_circ: 0.934036
Ran for 218550 frames Cell Events: 8054 mean_circ: 0.934006
Ran for 220550 frames Cell Events: 8122 mean_circ: 0.933959
Ran for 221050 frames Cell Events: 8137 mean_circ: 0.933937
Ran for 221550 frames Cell Events: 8154 mean_circ: 0.933892
Ran for 222550 frames Cell Events: 8186 mean_circ: 0.933924
Ran for 223050 frames Cell Events: 8195 mean_circ: 0.933926
Ran for 223550 frames Cell Events: 8215 mean_circ: 0.933882
Ran for 224050 frames Cell Events: 8232 mean_circ: 0.933832
Ran for 225050 frames Cell Events: 8260 mean_circ: 0.933873
Ran for 225550 frames Cell Events: 8274 mean_circ: 0.933872
Ran for 226050 frames Cell Events: 8282 mean_circ: 0.933881
Ran for 226550 frames Cell Events: 8300 mean_circ: 0.933903
Ran for 227050 frames Cell Events: 8316 mean_circ: 0.933918
Ran for 227550 frames Cell Events: 8328 mean_circ: 0.933919
Ran for 228550 frames Cell Events: 8356 mean_circ: 0.93397
Ran for 229550 frames Cell Events: 8388 mean_circ: 0.933968
Ran for 230050 frames Cell Events: 8397 mean_circ: 0.933984
Ran for 230550 frames Cell Events: 8416 mean_circ: 0.933964
Ran for 231050 frames Cell Events: 8426 mean_circ: 0.933956
Ran for 231550 frames Cell Events: 8434 mean_circ: 0.933951
Ran for 232050 frames Cell Events: 8456 mean_circ: 0.933957
Ran for 232550 frames Cell Events: 8472 mean_circ: 0.933944
Ran for 233050 frames Cell Events: 8488 mean_circ: 0.933963
Ran for 233550 frames Cell Events: 8510 mean_circ: 0.933908
Ran for 235050 frames Cell Events: 8549 mean_circ: 0.933923
Ran for 235550 frames Cell Events: 8565 mean_circ: 0.933939
Ran for 237550 frames Cell Events: 8654 mean_circ: 0.933874
Ran for 238550 frames Cell Events: 8687 mean_circ: 0.933856
Ran for 239050 frames Cell Events: 8702 mean_circ: 0.933762
Ran for 239550 frames Cell Events: 8713 mean_circ: 0.933772
Ran for 240050 frames Cell Events: 8730 mean_circ: 0.933725
Ran for 241050 frames Cell Events: 8751 mean_circ: 0.933715
Ran for 241550 frames Cell Events: 8766 mean_circ: 0.933697
Ran for 243050 frames Cell Events: 8809 mean_circ: 0.93371
Ran for 243550 frames Cell Events: 8821 mean_circ: 0.933717
Ran for 244550 frames Cell Events: 8865 mean_circ: 0.933725
Ran for 246050 frames Cell Events: 8901 mean_circ: 0.933705
Ran for 246550 frames Cell Events: 8924 mean_circ: 0.933741
Ran for 247050 frames Cell Events: 8939 mean_circ: 0.933751
Ran for 247550 frames Cell Events: 8951 mean_circ: 0.933739
Ran for 248050 frames Cell Events: 8960 mean_circ: 0.933739
Ran for 250050 frames Cell Events: 9052 mean_circ: 0.933697
Ran for 252050 frames Cell Events: 9125 mean_circ: 0.933626
Ran for 254050 frames Cell Events: 9198 mean_circ: 0.933701
Ran for 254550 frames Cell Events: 9211 mean_circ: 0.933693
Ran for 255050 frames Cell Events: 9232 mean_circ: 0.933656
Ran for 255550 frames Cell Events: 9251 mean_circ: 0.933626
Ran for 256550 frames Cell Events: 9296 mean_circ: 0.933635
Ran for 257550 frames Cell Events: 9331 mean_circ: 0.933639
Ran for 258050 frames Cell Events: 9357 mean_circ: 0.933668
Ran for 258550 frames Cell Events: 9370 mean_circ: 0.933654
Ran for 259050 frames Cell Events: 9395 mean_circ: 0.933655
Ran for 259550 frames Cell Events: 9407 mean_circ: 0.933657
Ran for 260050 frames Cell Events: 9425 mean_circ: 0.93367
Ran for 260550 frames Cell Events: 9438 mean_circ: 0.933653
Ran for 261050 frames Cell Events: 9457 mean_circ: 0.933672
Ran for 261550 frames Cell Events: 9481 mean_circ: 0.93369
Ran for 262050 frames Cell Events: 9506 mean_circ: 0.933645
Ran for 262550 frames Cell Events: 9518 mean_circ: 0.93362
Ran for 263050 frames Cell Events: 9531 mean_circ: 0.933635
Ran for 263550 frames Cell Events: 9543 mean_circ: 0.933653
Ran for 264050 frames Cell Events: 9557 mean_circ: 0.933687
Ran for 264550 frames Cell Events: 9567 mean_circ: 0.933679
Ran for 265050 frames Cell Events: 9582 mean_circ: 0.933718
Ran for 265550 frames Cell Events: 9597 mean_circ: 0.933694
Ran for 266050 frames Cell Events: 9607 mean_circ: 0.933673
Ran for 267050 frames Cell Events: 9649 mean_circ: 0.933648
Ran for 267550 frames Cell Events: 9662 mean_circ: 0.933633
Ran for 268050 frames Cell Events: 9677 mean_circ: 0.933639
Ran for 268550 frames Cell Events: 9691 mean_circ: 0.933625
Ran for 269050 frames Cell Events: 9710 mean_circ: 0.933602
Ran for 269550 frames Cell Events: 9728 mean_circ: 0.93363
Ran for 270050 frames Cell Events: 9748 mean_circ: 0.933596
Ran for 270550 frames Cell Events: 9757 mean_circ: 0.93361
Ran for 271550 frames Cell Events: 9786 mean_circ: 0.9336
Ran for 272550 frames Cell Events: 9816 mean_circ: 0.933612
Ran for 273550 frames Cell Events: 9857 mean_circ: 0.933638
Ran for 274050 frames Cell Events: 9868 mean_circ: 0.933632
Ran for 274550 frames Cell Events: 9874 mean_circ: 0.93364
Ran for 275050 frames Cell Events: 9890 mean_circ: 0.933651
Ran for 275550 frames Cell Events: 9903 mean_circ: 0.933626
Ran for 276050 frames Cell Events: 9921 mean_circ: 0.933617
Ran for 277550 frames Cell Events: 9972 mean_circ: 0.933642
End this measurment.
because stop condition (time/nr of cells) was met
Stopping time: 1.93648e+009
****************************************
Measurement finished
Mean Circularitiy: 0.933642
Mean Area: 692.783
Mean FL-1 intensity: 4024.92
Mean FL-2 intensity: 4302.92
Mean FL-3 intensity: 0
frames processed: 278160
Total Time: 139300ms
Number of Runs (new bg img) 0
Frames collected: 278463
Skipped frames: 106791
Rescued Frames: 1986727
Samples DAQ: 69615896
Samples written: 139231708
Samples per Channel: 69615854
FPS: 1999.01
Samples per second: 499754
Expected samples/s: 500000
Events: 10001
Events per second: 71.7946
jumped back (PMT): 6109
#Frames read, frequency
# 0 frames :406028
# 1 frames :127586
# 2 frames :6715
# 3 frames :2410
# 4 frames :1499
# 5 frames :1714
# 6 frames :2528
# 7 frames :1654
# 8 frames :1013
# 9 frames :736
# 10 frames :764
# 11 frames :717
# 12 frames :629
# 13 frames :468
# 14 frames :379
# 15 frames :317
# 16 frames :299
# 17 frames :243
# 18 frames :255
# 19 frames :192
# 20 frames :109
# 21 frames :95
# 22 frames :63
# 23 frames :73
# 24 frames :63
# 25 frames :39
# 26 frames :24
# 27 frames :37
# 28 frames :29
# 29 frames :34
# 30 frames :22
# 31 frames :26
# 32 frames :11
# 33 frames :9
# 34 frames :8
# 35 frames :11
# 36 frames :2
# 37 frames :4
# 38 frames :3
# 39 frames :4
# 40 frames :2
# 41 frames :5
# 42 frames :3
# 43 frames :4
# 44 frames :3
# 45 frames :2
# 46 frames :2
# 47 frames :1
# 48 frames :1
# 49 frames :1
# 50 frames :1
# 51 frames :1
# 53 frames :1
# 57 frames :1
# 62 frames :1
# 80 frames :1
M1_para.ini
[General]
Measurement Number = 1
Flow Rate [ul/s] = 0.04
Region = "Channel"
Channel width = 20
Current LED = 100
[Image]
Setup = Cell_Flow_2 + Fluor
Bin Ops = 5
Blur = 0
Trig Thresh = 50
t1 = -256
t2 = -6
Pix Size = 0.34
Cell Min = 6
Cell Max = 50
Thresh = 6
Diff_Method = 1
Margin = 0
#[FLUOR]
#fRT-DC V1.06170206
#Samplerate = 500000
#Bitdepthraw = 16
#Format = int16
#ADCmin = -1
#ADCmax = 1
#FL-Channels = 2
Laser Power 488 [mW] = 10
Laser Power 561 [mW] = 35
Laser Power 640 [mW] = 0
Ambient Temp. [C] = 25.2061
parameters.txt
#fRT-DC Configuration file
# You may change the values here before a measurement.
debug 0
hull 1
x_size 256
y_size 96
x_pos 504
y_pos 464
pix_size 0.34
cell_min 6
cell_max_x 50
cell_max_y 50
cell_aspect_min 0
cell_aspect_max 10
threshold1 -256
threshold2 -6
trig_threshold 50
MARGIN 0
write_videos 0
write_phot_det 0
show_video 1
write_events 1
fps 2000
samplesperframe 300
Vmin -1
Vmax 1
invertCh1 1
invertCh2 1
invertCh3 1
invertChX 1
samplerate 500000
bg_img 100
channel_width 20
current_led 100
pulse_led 2
binary_ops 5
blur 0
median_pmt 5
software_binops 1
flowctrl 0
flowwait 60
numberofchannels 2
firstchannel 4
secondchannel 5
thirdchannel -6
laser488 10
laser561 35
laser640 0
peakcountthreshold 1000
peakDipRatio 0.8
offsetFL1 0
offsetFL2 0
offsetFL3 0
rollingAverage 100
stopCell 10000
stopTime 0
minFL1 400
minFL2 668
minFL3 -32768
maxFL1 32767
maxFL2 32767
maxFL3 32767
setTimingAutomatic 1
plotWidth 0
getBrightness 0
intellPeak 0